Publikationen von Stephan Reichl
2026
- C. dos Santos J., Groenendijk A.L., Ruijten S.D.E., Knoll R., Vadaq N., Ter Horst R., Fok E.T., Witkowski W., Blaauw M.J.T., van Eekeren L.E., Vos W.A.J.W., Cleophas-Jacobs M., Reichl S., Otten T., Martens J.H.A., van der Meer A., Koninkx H., de Jonge M.I., Beyer M.D., van Lunzen J., Joosten L.A.B., Bock C., Rokx C., Verbon A., Vandekerckhove L., Aschenbrenner A.C., Schultze J.L., Matzaraki V., van der Ven A.J.A.M., Netea M.G.
Persistent Viral Control Status Is Associated with Enhanced Innate Immune Responses in People with HIV-1.
iScience 29(3):114807, (2026) [bib]
@ARTICLE{cdossantos2026pvcs114807, author = {C. dos Santos, J.~ and Groenendijk, A.L.~ and Ruijten, S.D.E.~ and Knoll, R.~ and Vadaq, N.~ and Ter Horst, R.~ and Fok, E.T.~ and Witkowski, W.~ and Blaauw, M.J.T.~ and van Eekeren, L.E.~ and Vos, W.A.J.W.~ and Cleophas-Jacobs, M.~ and Reichl, S.~ and Otten, T.~ and Martens, J.H.A.~ and van der Meer, A.~ and Koninkx, H.~ and de Jonge, M.I.~ and Beyer, M.D.~ and van Lunzen, J.~ and Joosten, L.A.B.~ and Bock, C.~ and Rokx, C.~ and Verbon, A.~ and Vandekerckhove, L.~ and Aschenbrenner, A.C.~ and Schultze, J.L.~ and Matzaraki, V.~ and van der Ven, A.J.A.M.~ and Netea, M.G.~}, title = {Persistent Viral Control Status Is Associated with Enhanced Innate Immune Responses in People with HIV-1.}, journal = {iScience}, year = {2026}, volume = {29}, number = {3}, pages = {114807}, doi = {10.1016/j.isci.2026.114807}, url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-105030614301\&doi=10.1016%2fj.isci.2026.114807\&partnerID=40\&md5=cfd54c1c82c1297e5e133a27f65a11cd} } - Hebenstreit K., Convalexius C., Reichl S., Huber S., Bock C., Samwald M.
What Are the Limits to Biomedical Research Acceleration through General-Purpose AI?
Scientific Reports 16:1304, (2026) [bib]
@ARTICLE{hebenstreit2026walt1304, author = {Hebenstreit, K.~ and Convalexius, C.~ and Reichl, S.~ and Huber, S.~ and Bock, C.~ and Samwald, M.~}, title = {What Are the Limits to Biomedical Research Acceleration through General-Purpose AI?}, journal = {Scientific Reports}, year = {2026}, volume = {16}, pages = {1304}, doi = {10.1038/s41598-025-32583-w} }
2025
- Traxler P., Reichl S., Folkman L., Shaw L., Fife V., Nemc A., Pasajlic D., Kusienicka A., Barreca D., Fortelny N., Rendeiro A.F., Halbritter F., Weninger W., Decker T., Farlik M., Bock C.
Integrated Time-Series Analysis and High-Content CRISPR Screening Delineate the Dynamics of Macrophage Immune Regulation.
Cell Systems 16(8):101346, (2025) [bib]
@ARTICLE{traxler2025itah101346, author = {Traxler, P.~ and Reichl, S.~ and Folkman, L.~ and Shaw, L.~ and Fife, V.~ and Nemc, A.~ and Pasajlic, D.~ and Kusienicka, A.~ and Barreca, D.~ and Fortelny, N.~ and Rendeiro, A.F.~ and Halbritter, F.~ and Weninger, W.~ and Decker, T.~ and Farlik, M.~ and Bock, C.~}, title = {Integrated Time-Series Analysis and High-Content CRISPR Screening Delineate the Dynamics of Macrophage Immune Regulation.}, journal = {Cell Systems}, year = {2025}, volume = {16}, number = {8}, pages = {101346}, issn = {2405-4720 2405-4712}, doi = {10.1016/j.cels.2025.101346}, keywords = {Animals;Mice;Signal Transduction;machine learning;bioinformatics;Gene Expression Regulation;macrophages;*Macrophages/immunology/metabolism;*Clustered Regularly Interspaced Short Palindromic Repeats/genetics;CRISPR-Cas Systems/genetics;CROP-seq;innate immunity;multi-omics profiling;pathogen infection;single-cell CRISPR sequencing;systems immunology;time-series analysis} }
2024
- Schaefer M., Reichl S., Ter Horst R., Nicolas A.M., Krausgruber T., Piras F., Stepper P., Bock C., Samwald M.
GPT-4 as a Biomedical Simulator.
Computers in Biology and Medicine 178:108796, (2024) [bib]
@ARTICLE{schaefer2024gaab108796, author = {Schaefer, M.~ and Reichl, S.~ and Ter Horst, R.~ and Nicolas, A.M.~ and Krausgruber, T.~ and Piras, F.~ and Stepper, P.~ and Bock, C.~ and Samwald, M.~}, title = {GPT-4 as a Biomedical Simulator.}, journal = {Computers in Biology and Medicine}, year = {2024}, volume = {178}, pages = {108796}, issn = {1879-0534 0010-4825}, doi = {10.1016/j.compbiomed.2024.108796}, keywords = {Artificial intelligence;Computational biology;Large language models;Biomedical simulation;GPT-4} } - Moorlag S.J.C.F.M., Folkman L., Ter Horst R., Krausgruber T., Barreca D., Schuster L.C., Fife V., Matzaraki V., Li W., Reichl S., Mourits V.P., Koeken V.A.C.M., de Bree L.C.J., Dijkstra H., Lemmers H., van Cranenbroek B., van Rijssen E., Koenen H.J.P.M., Joosten I., Xu C.-J., Li Y., Joosten L.A.B., van Crevel R., Netea M.G., Bock C.
Multi-Omics Analysis of Innate and Adaptive Responses to BCG Vaccination Reveals Epigenetic Cell States That Predict Trained Immunity.
Immunity 57(1), 171–187.e14, (2024) [bib]
@ARTICLE{moorlag2024maia171187e14, author = {Moorlag, S.J.C.F.M.~ and Folkman, L.~ and Ter Horst, R.~ and Krausgruber, T.~ and Barreca, D.~ and Schuster, L.C.~ and Fife, V.~ and Matzaraki, V.~ and Li, W.~ and Reichl, S.~ and Mourits, V.P.~ and Koeken, V.A.C.M.~ and de Bree, L.C.J.~ and Dijkstra, H.~ and Lemmers, H.~ and van Cranenbroek, B.~ and van Rijssen, E.~ and Koenen, H.J.P.M.~ and Joosten, I.~ and Xu, C.-J.~ and Li, Y.~ and Joosten, L.A.B.~ and van Crevel, R.~ and Netea, M.G.~ and Bock, C.~}, title = {Multi-Omics Analysis of Innate and Adaptive Responses to BCG Vaccination Reveals Epigenetic Cell States That Predict Trained Immunity.}, journal = {Immunity}, year = {2024}, volume = {57}, number = {1}, pages = {171--187.e14}, doi = {10.1016/j.immuni.2023.12.005} }