Publikationen

@ARTICLE{saito2024omni2318517,
  author = {Saito, T.~ and Espe, M.~ and Vikesa, V.~ and Bock, C.~ and Thomsen, T.H.~ and Adam, A.-C.~ and Fernandes, J.M.O.~ and Skjaerven, K.H.~},
  title = {One-Carbon Metabolism Nutrients Impact the Interplay between DNA Methylation and Gene Expression in Liver, Enhancing Protein Synthesis in Atlantic Salmon.},
  journal = {Epigenetics},
  year = {2024},
  volume = {19},
  pages = {2318517},
  doi = {10.1080/15592294.2024.2318517}
}

@ARTICLE{stolz2024nrc1e78738,
  author = {Stolz, V.~ and Silva, R.d.F.~ and Rica, R.~ and Zhu, C.~ and Preglej, T.~ and Hamminger, P.~ and Hainberger, D.~ and Alteneder, M.~ and Muller, L.~ and Waldherr, M.~ and Waltenberger, D.~ and Hladik, A.~ and Agerer, B.~ and Schuster, M.~ and Frey, T.~ and Krausgruber, T.~ and Knapp, S.~ and Campbell, C.~ and Schmetterer, K.~ and Trauner, M.~ and Bergthaler, A.~ and Bock, C.~ and Boucheron, N.~ and Ellmeier, W.~},
  title = {Nuclear Receptor Corepressor 1 Controls Regulatory T Cell Subset Differentiation and Effector Function.},
  journal = {eLife},
  year = {2024},
  volume = {13},
  pages = {e78738},
  doi = {10.7554/eLife.78738}
}

@ARTICLE{schaefer2024mltt20241015618501,
  author = {Schaefer, M.~ and Peneder, P.~ and Malzl, D.~ and Peycheva, M.~ and Burton, J.~ and Hakobyan, A.~ and Sharma, V.~ and Krausgruber, T.~ and Menche, J.~ and Tomazou, E.M.~ and Bock, C.~},
  title = {Multimodal Learning of Transcriptomes and Text Enables Interactive Single-Cell RNA-Seq Data Exploration with Natural-Language Chats.},
  journal = {bioRxiv},
  year = {2024},
  pages = {2024.10.15.618501},
  doi = {10.1101/2024.10.15.618501},
  url = {http://biorxiv.org/content/early/2024/10/18/2024.10.15.618501.abstract}
}

@ARTICLE{schmitt2024mcfd20241001615992,
  author = {Schmitt, M.T.~ and Ruiz-Fernandez, M.J.~ and Stefanowski, K.~ and Kroll, J.~ and Hauschild, R.~ and Merrin, J.~ and Penz, T.~ and Kiermaier, E.~ and Bock, C.~ and Straub, T.~ and Renkawitz, J.~},
  title = {Mechanical Centrosome Fracturing during Cell Navigation.},
  journal = {bioRxiv},
  year = {2024},
  pages = {2024.10.01.615992},
  doi = {10.1101/2024.10.01.615992}
}

@ARTICLE{lin2024pocb20240916609142,
  author = {Lin, Y.-Y.~ and Breuer, K.~ and Weichenhan, D.~ and Lafrenz, P.~ and Wilk, A.~ and Chepeleva, M.~ and M{\"u}cke, O.~ and Sch{\"o}nung, M.~ and Petermann, F.~ and Kensche, P.~ and Weiser, L.~ and Thommen, F.~ and Giacomelli, G.~ and Nordstroem, K.~ and Gonzales-Avalos, E.~ and Merkel, A.~ and Kretzmer, H.~ and Fischer, J.~ and Kr{\"a}mer, S.~ and Iskar, M.~ and Wolf, S.~ and Buchhalter, I.~ and Esteller, M.~ and Lawerenz, C.~ and Twardziok, S.~ and Zapatka, M.~ and Hovestadt, V.~ and Schlesner, M.~ and Schulz, M.~ and Hoffmann, S.~ and Gerhauser, C.~ and Walter, J.~ and Hartmann, M.~ and Lipka, D.B.~ and Assenov, Y.~ and Bock, C.~ and Plass, C.~ and Toth, R.~ and Lutsik, P.~},
  title = {Pipeline Olympics: Continuable Benchmarking of Computational Workflows for DNA Methylation Sequencing Data against an Experimental Gold-Standard.},
  journal = {bioRxiv},
  year = {2024},
  pages = {2024.09.16.609142},
  doi = {10.1101/2024.09.16.609142},
  url = {http://biorxiv.org/content/early/2024/09/19/2024.09.16.609142.abstract}
}

@ARTICLE{schaefer2024gaab108796,
  author = {Schaefer, M.~ and Reichl, S.~ and Ter Horst, R.~ and Nicolas, A.M.~ and Krausgruber, T.~ and Piras, F.~ and Stepper, P.~ and Bock, C.~ and Samwald, M.~},
  title = {GPT-4 as a Biomedical Simulator.},
  journal = {Computers in Biology and Medicine},
  year = {2024},
  volume = {178},
  pages = {108796},
  issn = {1879-0534 0010-4825},
  doi = {10.1016/j.compbiomed.2024.108796},
  keywords = {Artificial intelligence;Computational biology;Large language models;Biomedical simulation;GPT-4}
}

@ARTICLE{saito2024assa20240203578741,
  author = {Saito, T.~ and Espe, M.~ and Mommens, M.~ and Bock, C.~ and Fernandes, J.M.~ and Skjaerven, K.H.~},
  title = {Altered Spawning Seasons of Atlantic Salmon Broodstock Genetically and Epigenetically Influence Cell Cycle and Lipid-Mediated Regulations in Their Offspring.},
  journal = {bioRxiv},
  year = {2024},
  pages = {2024.02.03.578741},
  doi = {10.1101/2024.02.03.578741}
}

@ARTICLE{enk2024ttcpeadd6774,
  author = {Enk, L.U.B.~ and Hellmig, M.~ and Riecken, K.~ and Kilian, C.~ and Datlinger, P.~ and Jauch-Speer, S.L.~ and Neben, T.~ and Sultana, Z.~ and Sivayoganathan, V.~ and Borchers, A.~ and Paust, H.-J.~ and Zhao, Y.~ and Asada, N.~ and Liu, S.~ and Agalioti, T.~ and Pelczar, P.~ and Wiech, T.~ and Bock, C.~ and Huber, T.B.~ and Huber, S.~ and Bonn, S.~ and Gagliani, N.~ and Fehse, B.~ and Panzer, U.~ and Krebs, C.F.~},
  title = {Targeting T Cell Plasticity in Kidney and Gut Inflammation by Pooled Single-Cell CRISPR Screening.},
  journal = {Science Immunology},
  year = {2024},
  volume = {9},
  number = {96},
  pages = {eadd6774},
  issn = {2470-9468},
  doi = {10.1126/sciimmunol.add6774},
  keywords = {Animals;Female;Humans;Male;Mice;Mice;Inbred C57BL;*Single-Cell Analysis;*Th17 Cells/immunology;Cell Plasticity/immunology/genetics;Clustered Regularly Interspaced Short Palindromic Repeats/immunology;Colitis/immunology/genetics;CRISPR-Cas Systems;Glomerulonephritis/immunology/genetics;Inflammation/immunology/genetics;Kidney/immunology/pathology}
}

@ARTICLE{slim2024tpma183,
  author = {Slim, M.A.~ and van Mourik, N.~ and Bakkerus, L.~ and Fuller, K.~ and Acharya, L.~ and Giannidis, T.~ and Dionne, J.C.~ and Oczkowski, S.J.W.~ and Netea, M.G.~ and Pickkers, P.~ and Giamarellos-Bourboulis, E.J.~ and Muller, M.C.A.~ and van der Poll, T.~ and Wiersinga, W.J.~ and Vlaar, A.P.J.~ and van Vught, L.A.~ and {ImmunoSep Consortium}},
  title = {Towards Personalized Medicine: A Scoping Review of Immunotherapy in Sepsis.},
  journal = {Critical Care},
  year = {2024},
  volume = {28},
  pages = {183},
  doi = {10.1186/s13054-024-04964-6}
}

@ARTICLE{novarino2024mbgm860861,
  author = {Novarino, G.~ and Bock, C.~},
  title = {Mapping the Brain’s Gene-Regulatory Maze.},
  journal = {Science},
  year = {2024},
  volume = {384},
  number = {6698},
  pages = {860--861},
  doi = {10.1126/science.adp4663}
}

@ARTICLE{lim2024almm11521164,
  author = {Lim, C.X.~ and Redl, A.~ and Kleissl, L.~ and Pandey, R.V.~ and Mayerhofer, C.~ and El Jammal, T.~ and Mazic, M.~ and Gonzales, K.~ and Sukhbaatar, N.~ and Krausgruber, T.~ and Bock, C.~ and Hengstschl{\"a}ger, M.~ and Calender, A.~ and Pacheco, Y.~ and Stary, G.~ and Weichhart, T.~},
  title = {Aberrant Lipid Metabolism in Macrophages Is Associated with Granuloma Formation in Sarcoidosis.},
  journal = {American Journal of Respiratory and Critical Care Medicine},
  year = {2024},
  volume = {209},
  number = {9},
  pages = {1152--1164},
  issn = {1535-4970 1073-449X},
  doi = {10.1164/rccm.202307-1273OC},
  keywords = {macrophages;mTOR;lipid metabolism;sarcoidosis}
}

@ARTICLE{kocher2024airae272e274,
  author = {Kocher, K.~ and Moosmann, C.~ and Drost, F.~ and Sch{\"u}lein, C.~ and Irrgang, P.~ and Steininger, P.~ and Zhong, J.~ and Tr{\"a}ger, J.~ and Spriewald, B.~ and Bock, C.~ and Busch, D.H.~ and Bogdan, C.~ and Schubert, B.~ and Winkler, T.H.~ and Tenbusch, M.~ and Schuster, E.-M.~ and Schober, K.~},
  title = {Adaptive Immune Responses Are Larger and Functionally Preserved in a Hypervaccinated Individual.},
  journal = {Lancet Infectious Diseases},
  year = {2024},
  volume = {24},
  number = {5},
  pages = {e272--e274},
  issn = {1474-4457 1473-3099},
  doi = {10.1016/S1473-3099(24)00134-8}
}

@ARTICLE{fortelny2024jsmh847859,
  author = {Fortelny, N.~ and Farlik, M.~ and Fife, V.~ and Gorki, A.-D.~ and Lassnig, C.~ and Maurer, B.~ and Meissl, K.~ and Dolezal, M.~ and Boccuni, L.~ and Ravi Sundar Jose Geetha, A.~ and Akagha, M.J.~ and Karjalainen, A.~ and Shoebridge, S.~ and Farhat, A.~ and Mann, U.~ and Jain, R.~ and Tikoo, S.~ and Zila, N.~ and Esser-Skala, W.~ and Krausgruber, T.~ and Sitnik, K.~ and Penz, T.~ and Hladik, A.~ and Suske, T.~ and Zahalka, S.~ and Senekowitsch, M.~ and Barreca, D.~ and Halbritter, F.~ and Macho-Maschler, S.~ and Weninger, W.~ and Neubauer, H.A.~ and Moriggl, R.~ and Knapp, S.~ and Sexl, V.~ and Strobl, B.~ and Decker, T.~ and M{\"u}ller, M.~ and Bock, C.~},
  title = {JAK-STAT Signaling Maintains Homeostasis in T Cells and Macrophages.},
  journal = {Nature Immunology},
  year = {2024},
  volume = {25},
  number = {5},
  pages = {847--859},
  issn = {1529-2916 1529-2908},
  doi = {10.1038/s41590-024-01804-1},
  keywords = {Animals;Mice;Mice;Inbred C57BL;*Homeostasis;*Signal Transduction;Gene Expression Regulation;*Janus Kinases/metabolism;*Macrophages/immunology/metabolism;*Mice;Knockout;*STAT Transcription Factors/metabolism;CD8-Positive T-Lymphocytes/immunology/metabolism;Interferon-Stimulated Gene Factor 3;gamma Subunit/metabolism/genetics;STAT1 Transcription Factor/metabolism/genetics;TYK2 Kinase/metabolism/genetics}
}

@ARTICLE{bock2024bjsm741742,
  author = {Bock, C.~ and Decker, T.~ and M{\"u}ller, M.~},
  title = {Baseline JAK-STAT Signaling Maintains Immune Cell Homeostasis.},
  journal = {Nature Immunology},
  year = {2024},
  volume = {25},
  number = {5},
  pages = {741--742},
  issn = {1529-2908},
  doi = {10.1038/s41590-024-01805-0}
}

@ARTICLE{suske2024hshte168536,
  author = {Suske, T.~ and Sorger, H.~ and Manhart, G.~ and Ruge, F.~ and Prutsch, N.~ and Zimmerman, M.W.~ and Eder, T.~ and Abdallah, D.I.~ and Maurer, B.~ and Wagner, C.~ and Schonefeldt, S.~ and Spirk, K.~ and Pichler, A.~ and Pemovska, T.~ and Schweicker, C.~ and Poloske, D.~ and Hubanic, E.~ and Jungherz, D.~ and Muller, T.A.~ and Aung, M.M.K.~ and Orlova, A.~ and Pham, H.T.T.~ and Zimmel, K.~ and Krausgruber, T.~ and Bock, C.~ and Muller, M.~ and Dahlhoff, M.~ and Boersma, A.~ and Rulicke, T.~ and Fleck, R.~ and de Araujo, E.D.~ and Gunning, P.T.~ and Aittokallio, T.~ and Mustjoki, S.~ and Sanda, T.~ and Hartmann, S.~ and Grebien, F.~ and Hoermann, G.~ and Haferlach, T.~ and Staber, P.B.~ and Neubauer, H.A.~ and Look, A.T.~ and Herling, M.~ and Moriggl, R.~},
  title = {Hyperactive STAT5 Hijacks T Cell Receptor Signaling and Drives Immature T Cell Acute Lymphoblastic Leukemia.},
  journal = {Journal of Clinical Investigation},
  year = {2024},
  volume = {134},
  number = {8},
  pages = {e168536},
  doi = {10.1172/JCI168536}
}

@ARTICLE{hevesi2024teng2762,
  author = {Hevesi, Z.~ and Bakker, J.~ and Tretiakov, E.O.~ and Adori, C.~ and Raabgrund, A.~ and Barde, S.S.~ and Caramia, M.~ and Krausgruber, T.~ and Ladst{\"a}tter, S.~ and Bock, C.~ and H{\"o}kfelt, T.~ and Harkany, T.~},
  title = {Transient Expression of the Neuropeptide Galanin Modulates Peripheral‑to‑Central Connectivity in the Somatosensory Thalamus during Whisker Development in Mice.},
  journal = {Nature Communications},
  year = {2024},
  volume = {15},
  pages = {2762},
  issn = {2041-1723},
  doi = {10.1038/s41467-024-47054-5},
  keywords = {Animals;Humans;Mice;*Galanin/metabolism;*Vibrissae/physiology;Axons/metabolism;Brain/metabolism;Thalamus/metabolism}
}

@ARTICLE{malta2024eegi741756,
  author = {Malta, T.M.~ and Sabedot, T.S.~ and Morosini, N.S.~ and Datta, I.~ and Garofano, L.~ and Vallentgoed, W.~ and Varn, F.S.~ and Aldape, K.~ and D’Angelo, F.~ and Bakas, S.~ and Barnholtz-Sloan, J.S.~ and Gan, H.K.~ and Hasanain, M.~ and Hau, A.-C.~ and Johnson, K.C.~ and Cazacu, S.~ and deCarvalho, A.C.~ and Khasraw, M.~ and Kocakavuk, E.~ and Kouwenhoven, M.C.M.~ and Migliozzi, S.~ and Niclou, S.P.~ and Niers, J.M.~ and Ormond, D.R.~ and Paek, S.H.~ and Reifenberger, G.~ and Sillevis Smitt, P.A.~ and Smits, M.~ and Stead, L.F.~ and van den Bent, M.J.~ and Van Meir, E.G.~ and Walenkamp, A.~ and Weiss, T.~ and Weller, M.~ and Westerman, B.A.~ and Ylstra, B.~ and Wesseling, P.~ and Lasorella, A.~ and French, P.J.~ and Poisson, L.M.~ and The GLASS, Consortium~ and Verhaak, R.G.W.~ and Iavarone, A.~ and Noushmehr,H.{ }[Bock,C.]},
  title = {The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen.},
  journal = {Cancer Research},
  year = {2024},
  volume = {84},
  number = {5},
  pages = {741--756},
  issn = {1538-7445 0008-5472},
  doi = {10.1158/0008-5472.CAN-23-2093},
  keywords = {Humans;Mutation;Epigenomics;*Brain Neoplasms/pathology;*Glioma/pathology;*Isocitrate Dehydrogenase/genetics/metabolism;Epigenesis;Genetic;Neoplasm Recurrence;Local/genetics;Tumor Microenvironment}
}

@ARTICLE{rica2024hcgm20240228580886,
  author = {Rica, R.~ and Waldherr, M.~ and Schulein, M.~ and Miyakoda, E.~ and Sandner, L.~ and Stolz, V.~ and Waltenberger, D.~ and Krausgruber, T.~ and Bock, C.~ and Boucheron, N.~ and Ellmeier, W.~ and Sakaguchi, S.~},
  title = {HDAC1 Controls the Generation and Maintenance of Effector-Like CD8+ T Cells during Chronic Viral Infection.},
  journal = {bioRxiv},
  year = {2024},
  pages = {2024.02.28.580886},
  doi = {10.1101/2024.02.28.580886}
}

@ARTICLE{braithwaite2024msrse23448,
  author = {Braithwaite, A.T.~ and Akbar, N.~ and Pezzolla, D.~ and Paget, D.~ and Krausgruber, T.~ and Bock, C.~ and Carnicer, R.~ and Choudhury, R.P.~},
  title = {Multi-Organ Single-Cell RNA Sequencing in Mice Reveals Early Hyperglycemia Responses That Converge on Fibroblast Dysregulation.},
  journal = {FASEB Journal},
  year = {2024},
  volume = {38},
  number = {3},
  pages = {e23448},
  issn = {1530-6860 0892-6638},
  doi = {10.1096/fj.202302003R},
  keywords = {Animals;Male;Mice;Mice;Inbred C57BL;gene expression;fibrosis;mice;hyperglycemia;Sequence Analysis;RNA;*Diabetes Mellitus;Type 1/genetics;*Hyperglycemia/genetics;endothelial cells;Endothelial Cells;monocytes;myofibroblast;RRID:IMSR\_JAX:000664;RRID:SCR\_001618;RRID:SCR\_001905;RRID:SCR\_007322;RRID:SCR\_019010;RRID:SCR\_021946;RRID:SCR\_022146;RRID:SCR\_022254;single-cell RNA-seq;Streptozocin/toxicity;streptozotocin;type 1 diabetes}
}

@ARTICLE{redl2024esmie81e91,
  author = {Redl, A.~ and Doberer, K.~ and Unterluggauer, L.~ and Kleissl, L.~ and Krall, C.~ and Mayerhofer, C.~ and Reininger, B.~ and Stary, V.~ and Zila, N.~ and Weninger, W.~ and Weichhart, T.~ and Bock, C.~ and Krausgruber, T.~ and Stary, G.~},
  title = {Efficacy and Safety of mTOR Inhibition in Cutaneous Sarcoidosis: A Single-Centre Trial.},
  journal = {Lancet Rheumatology},
  year = {2024},
  volume = {6},
  number = {2},
  pages = {e81--e91},
  issn = {2665-9913},
  doi = {10.1016/S2665-9913(23)00302-8}
}

@ARTICLE{cheung2024mpio230246e11,
  author = {Cheung, G.~ and Pauler, F.M.~ and Koppensteiner, P.~ and Krausgruber, T.~ and Streicher, C.~ and Schrammel, M.~ and Gutmann-{\"O}zgen, N.~ and Ivec, A.E.~ and Bock, C.~ and Shigemoto, R.~ and Hippenmeyer, S.~},
  title = {Multipotent Progenitors Instruct Ontogeny of the Superior Colliculus.},
  journal = {Neuron},
  year = {2024},
  volume = {112},
  number = {2},
  pages = {230--246.e11},
  issn = {1097-4199 0896-6273},
  doi = {10.1016/j.neuron.2023.11.009},
  keywords = {Animals;*Neural Stem Cells/metabolism;*Superior Colliculi/physiology;Cell Lineage/physiology;cell-type diversity;clonal analysis;lineage;MADM;MADM-CloneSeq;Mammals;mosaic analysis with double markers;Neuroglia/metabolism;Neurons/metabolism;radial glial progenitor;RGP;stem cell;superior colliculus}
}

@ARTICLE{moorlag2024maia171187e14,
  author = {Moorlag, S.J.C.F.M.~ and Folkman, L.~ and Ter Horst, R.~ and Krausgruber, T.~ and Barreca, D.~ and Schuster, L.C.~ and Fife, V.~ and Matzaraki, V.~ and Li, W.~ and Reichl, S.~ and Mourits, V.P.~ and Koeken, V.A.C.M.~ and de Bree, L.C.J.~ and Dijkstra, H.~ and Lemmers, H.~ and van Cranenbroek, B.~ and van Rijssen, E.~ and Koenen, H.J.P.M.~ and Joosten, I.~ and Xu, C.-J.~ and Li, Y.~ and Joosten, L.A.B.~ and van Crevel, R.~ and Netea, M.G.~ and Bock, C.~},
  title = {Multi-Omics Analysis of Innate and Adaptive Responses to BCG Vaccination Reveals Epigenetic Cell States That Predict Trained Immunity.},
  journal = {Immunity},
  year = {2024},
  volume = {57},
  number = {1},
  pages = {171--187.e14},
  doi = {10.1016/j.immuni.2023.12.005}
}

@ARTICLE{giamarellosbourboulis2024pspi1928,
  author = {Giamarellos-Bourboulis, E.J.~ and Aschenbrenner, A.C.~ and Bauer, M.~ and Bock, C.~ and Calandra, T.~ and Gat-Viks, I.~ and Kyriazopoulou, E.~ and Lupse, M.~ and Monneret, G.~ and Pickkers, P.~ and Schultze, J.L.~ and van der Poll, T.~ and van de Veerdonk, F.L.~ and Vlaar, A.P.J.~ and Weis, S.~ and Wiersinga, W.J.~ and Netea, M.G.~},
  title = {The Pathophysiology of Sepsis and Precision-Medicine-Based Immunotherapy.},
  journal = {Nature Immunology},
  year = {2024},
  volume = {25},
  number = {1},
  pages = {19--28},
  issn = {1529-2916 1529-2908},
  doi = {10.1038/s41590-023-01660-5},
  keywords = {Humans;Biomarkers;Immunotherapy;*Precision Medicine;*Sepsis/therapy}
}

@ARTICLE{fritsch2023msbm19311943e8,
  author = {Fritsch, S.D.~ and Sukhbaatar, N.~ and Gonzales, K.~ and Sahu, A.~ and Tran, L.~ and Vogel, A.~ and Mazic, M.~ and Wilson, J.L.~ and Forisch, S.~ and Mayr, H.~ and Oberle, R.~ and Weiszmann, J.~ and Brenner, M.~ and Vanhoutte, R.~ and Hofmann, M.~ and Pirnes-Karhu, S.~ and Magnes, C.~ and K{\"u}hnast, T.~ and Weckwerth, W.~ and Bock, C.~ and Klavins, K.~ and Hengstschl{\"a}ger, M.~ and Moissl-Eichinger, C.~ and Schabbauer, G.~ and Egger, G.~ and Pirinen, E.~ and Verhelst, S.H.L.~ and Weichhart, T.~},
  title = {Metabolic Support by Macrophages Sustains Colonic Epithelial Homeostasis.},
  journal = {Cell Metabolism},
  year = {2023},
  volume = {35},
  number = {11},
  pages = {1931--1943.e8},
  issn = {1932-7420 1550-4131},
  doi = {10.1016/j.cmet.2023.09.010},
  keywords = {macrophages;arginase-1;homeostasis;immunometabolism;intestine;mTOR;mTORC1;polyamines;spermine}
}

@ARTICLE{brazdilova2023mstus348s348,
  author = {Brazdilova, K.~ and Redl, A.~ and Unterluggauer, L.~ and Kleissl, L.~ and Krausgruber, T.~ and Weichhart, T.~ and Bock, C.~ and Stary, G.~},
  title = {Mapping Single-Cell Trajectories upon mTOR Inhibition over Time in Patients with Granulomatous Disease.},
  journal = {Journal of Investigative Dermatology},
  year = {2023},
  volume = {143},
  number = {11, Suppl: Abstracts 5th Inflammatory Skin Disease Summit (ISDS), Vienna, Austria, 15–18 Nov 2023},
  pages = {S348},
  issn = {0022-202X},
  url = {https://doi.org/10.1016/j.jid.2023.09.103}
}

@ARTICLE{harikumar2023rtcfs359s359,
  author = {Harikumar, N.~ and Sharma, V.~ and Platzer, R.~ and Borik, L.~ and Pfisterer, K.~ and Petzelbauer, P.~ and Menche, J.~ and Hoeller, C.~ and Dupré, L.~ and Huppa, J.~ and Bock, C.~ and Stary, G.~},
  title = {Regulation of T Cell Functions by Cytoskeletal Proteins in the Melanoma Tumor Microenvironment.},
  journal = {Journal of Investigative Dermatology},
  year = {2023},
  volume = {143},
  number = {11, Suppl: Abstracts 5th Inflammatory Skin Disease Summit 2023, Vienna, Austria, 15–18 November 2023},
  pages = {S359},
  issn = {0022-202X},
  doi = {10.1016/j.jid.2023.09.167},
  url = {https://www.sciencedirect.com/science/article/pii/S0022202X2302763X}
}

@ARTICLE{redl2023emics360s360,
  author = {Redl, A.~ and Doberer, K.~ and Unterluggauer, L.~ and Krall, C.~ and Mayerhofer, C.~ and Kleissl, L.~ and Reininger, B.~ and Stary, V.~ and Zilla, N.~ and Weninger, W.~ and Weichhart, T.~ and Bock, C.~ and Krausgruber, T.~ and Stary, G.~},
  title = {Effectivity of mTOR Inhibition in Cutaneous Sarcoidosis.},
  journal = {Journal of Investigative Dermatology},
  year = {2023},
  volume = {143},
  number = {11, Suppl: Abstracts 5th Inflammatory Skin Disease Summit (ISDS), Vienna, Austria, 15–18 Nov 2023},
  pages = {S360},
  issn = {0022-202X},
  url = {https://doi.org/10.1016/j.jid.2023.09.176}
}

@ARTICLE{nenning2023rfdrvdad136,
  author = {Nenning, K.-H.~ and Gesperger, J.~ and Furtner, J.~ and Nemc, A.~ and Roetzer-Pejrimovsky, T.~ and Choi, S.-W.~ and Mitter, C.~ and Leber, S.L.~ and Hofmanninger, J.~ and Klughammer, J.~ and Erg{\"u}ner, B.~ and Bauer, M.~ and Brada, M.~ and Chong, K.~ and Brandner-Kokalj, T.~ and Freyschlag, C.F.~ and Grams, A.~ and Haybaeck, J.~ and Hoenigschnabl, S.~ and Hoffermann, M.~ and Iglseder, S.~ and Kiesel, B.~ and Kitzwoegerer, M.~ and Kleindienst, W.~ and Marhold, F.~ and Moser, P.~ and Oberndorfer, S.~ and Pinggera, D.~ and Scheichel, F.~ and Sherif, C.~ and Stockhammer, G.~ and Stultschnig, M.~ and Thomé, C.~ and Trenkler, J.~ and Urbanic-Purkart, T.~ and Weis, S.~ and Widhalm, G.~ and Wuertz, F.~ and Preusser, M.~ and Baumann, B.~ and Simonitsch-Klupp, I.~ and Nam, D.-H.~ and Bock, C.~ and Langs, G.~ and Woehrer, A.~},
  title = {Radiomic Features Define Risk and Are Linked to DNA Methylation Attributes in Primary CNS Lymphoma.},
  journal = {Neuro-Oncology Advances},
  year = {2023},
  volume = {5},
  pages = {vdad136},
  issn = {2632-2498},
  doi = {10.1093/noajnl/vdad136},
  keywords = {survival;DNA methylation;primary CNS lymphoma;radiomics;risk score}
}

@ARTICLE{stolz2023ncts128128,
  author = {Stolz, V.~ and Rica, R.~ and Zhu, C.~ and Freitas, E.~ and Preglej, T.~ and Hamminger, P.~ and Hainberger, D.~ and Alteneder, M.~ and M{\"u}ller, L.~ and Agerer, B.~ and Schuster, M.~ and Frey, T.~ and Krausgruber, T.~ and Boucheron, N.~ and Knapp, S.~ and Schmetterer, K.~ and Trauner, M.~ and Bergthaler, A.~ and Bock, C.~ and Ellmeier, W.~},
  title = {NCOR1 Controls Treg Subset Differentiation and Effector Function.},
  journal = {European Journal of Immunology},
  year = {2023},
  volume = {53},
  number = {Suppl 2: Abstracts Joint Conference of the Société Française d’Immunologie (SFI) and the Deutsche Gesellschaft f{\"u}r Immunologie (DGfI), Strasbourg, France, 26–29 Sep 2023},
  pages = {128},
  issn = {0014-2980},
  doi = {DOI: 10.1002/eji.202370300},
  url = {https://onlinelibrary.wiley.com/toc/15214141/2023/53/S2}
}

@ARTICLE{kostelbal2023bnmc827845,
  author = {Kostel Bal, S.~ and Giuliani, S.~ and Block, J.~ and Repiscak, P.~ and Hafemeister, C.~ and Shahin, T.~ and Kasap, N.~ and Ransmayr, B.~ and Miao, Y.~ and van de Wetering, C.~ and Frohne, A.~ and Jimenez-Heredia, R.~ and Schuster, M.K.~ and Zoghi, S.~ and Hertlein, V.~ and Thian, M.~ and Bykov, A.~ and Babayeva, R.~ and Bilgic Eltan, S.~ and Karakoc-Aydiner, E.~ and Shaw, L.E.~ and Chowdury, I.~ and Varjosalo, M.~ and Arg{\"u}ello, R.J.~ and Farlik, M.~ and Ozen, A.~ and Serfling, E.A.E.~ and Dupré, L.~ and Bock, C.~ and Halbritter, F.~ and Hannich, J.T.~ and Castanon, I.~ and Kraakman, M.J.~ and Baris, S.~ and Boztug, K.~},
  title = {Biallelic NFATC1 Mutations Cause an Inborn Error of Immunity with Impaired CD8+ T-Cell Function and Perturbed Glycolysis.},
  journal = {Blood},
  year = {2023},
  volume = {142},
  number = {9},
  pages = {827--845},
  issn = {0006-4971},
  doi = {10.1182/blood.2022018303},
  url = {https://doi.org/10.1182/blood.2022018303}
}

@ARTICLE{enders2023pppp4504,
  author = {Enders, L.~ and Siklos, M.~ and Borggr{\"a}fe, J.~ and Gaussmann, S.~ and Koren, A.~ and Malik, M.~ and Tomek, T.~ and Schuster, M.~ and Reiniš, J.~ and Hahn, E.~ and Rukavina, A.~ and Reicher, A.~ and Casteels, T.~ and Bock, C.~ and Winter, G.E.~ and Hannich, J.T.~ and Sattler, M.~ and Kubicek, S.~},
  title = {Pharmacological Perturbation of the Phase-Separating Protein SMNDC1.},
  journal = {Nature Communications},
  year = {2023},
  volume = {14},
  pages = {4504},
  issn = {2041-1723},
  doi = {10.1038/s41467-023-40124-0}
}

@ARTICLE{khan2023spur20230810552772,
  author = {Khan, M.~ and Alteneder, M.~ and Reiter, W.~ and Krausgruber, T.~ and Dobnikar, L.~ and Madern, M.~ and Waldherr, M.~ and Bock, C.~ and Hartl, M.~ and Ellmeier, W.~ and Henriksson, J.~ and Boucheron, N.~},
  title = {Single-Cell Profiling Uncovers Regulatory Programs of Pathogenic Th2 Cells in Allergic Asthma.},
  journal = {bioRxiv},
  year = {2023},
  pages = {2023.08.10.552772},
  doi = {10.1101/2023.08.10.552772}
}

@ARTICLE{block2023sina527539,
  author = {Block, J.~ and Rashkova, C.~ and Castanon, I.~ and Zoghi, S.~ and Platon, J.~ and Ardy, R.C.~ and Fujiwara, M.~ and Chaves, B.~ and Schoppmeyer, R.~ and van der Made, C.I.~ and Jimenez Heredia, R.~ and Harms, F.L.~ and Alavi, S.~ and Alsina, L.~ and Sanchez Moreno, P.~ and Ávila Polo, R.~ and Cabrera-Pérez, R.~ and Kostel Bal, S.~ and Pfajfer, L.~ and Ransmayr, B.~ and Mautner, A.-K.~ and Kondo, R.~ and Tinnacher, A.~ and Caldera, M.~ and Schuster, M.~ and Domínguez Conde, C.~ and Platzer, R.~ and Salzer, E.~ and Boyer, T.~ and Brunner, H.G.~ and Nooitgedagt-Frons, J.E.~ and Iglesias, E.~ and Deyà-Martinez, A.~ and Camacho-Lovillo, M.~ and Menche, J.~ and Bock, C.~ and Huppa, J.B.~ and Pickl, W.F.~ and Distel, M.~ and Yoder, J.A.~ and Traver, D.~ and Engelhardt, K.R.~ and Linden, T.~ and Kager, L.~ and Hannich, J.T.~ and Hoischen, A.~ and Hambleton, S.~ and Illsinger, S.~ and Da Costa, L.~ and Kutsche, K.~ and Chavoshzadeh, Z.~ and van Buul, J.D.~ and Antón, J.~ and Calzada-Hernández, J.~ and Neth, O.~ and Viaud, J.~ and Nishikimi, A.~ and Dupré, L.~ and Boztug, K.~},
  title = {Systemic Inflammation and Normocytic Anemia in DOCK11 Deficiency.},
  journal = {New England Journal of Medicine},
  year = {2023},
  volume = {389},
  number = {6},
  pages = {527--539},
  issn = {1533-4406 0028-4793},
  doi = {10.1056/NEJMoa2210054}
}

@ARTICLE{kiss2023crcc18091824e10,
  author = {Kiss, M.G.~ and Papac-Milicevic, N.~ and Porsch, F.~ and Tsiantoulas, D.~ and Hendrikx, T.~ and Takaoka, M.~ and Dinh, H.Q.~ and Narzt, M.-S.~ and Goderle, L.~ and Ozsvar-Kozma, M.~ and Schuster, M.~ and Fortelny, N.~ and Hladik, A.~ and Knapp, S.~ and Gruber, F.~ and Pickering, M.C.~ and Bock, C.~ and Swirski, F.K.~ and Ley, K.~ and Zernecke, A.~ and Cochain, C.~ and Kemper, C.~ and Mallat, Z.~ and Binder, C.J.~},
  title = {Cell-Autonomous Regulation of Complement C3 by Factor H Limits Macrophage Efferocytosis and Exacerbates Atherosclerosis.},
  journal = {Immunity},
  year = {2023},
  volume = {56},
  number = {8},
  pages = {1809--1824.e10},
  doi = {10.1016/j.immuni.2023.06.026}
}

@ARTICLE{fetahu2023steu3620,
  author = {Fetahu, I.S.~ and Esser-Skala, W.~ and Dnyansagar, R.~ and Sindelar, S.~ and Rifatbegovic, F.~ and Bileck, A.~ and Skos, L.~ and Bozsaky, E.~ and Lazic, D.~ and Shaw, L.~ and T{\"o}tzl, M.~ and Tarlungeanu, D.~ and Bernkopf, M.~ and Rados, M.~ and Weninger, W.~ and Tomazou, E.M.~ and Bock, C.~ and Gerner, C.~ and Ladenstein, R.~ and Farlik, M.~ and Fortelny, N.~ and Taschner-Mandl, S.~},
  title = {Single-Cell Transcriptomics and Epigenomics Unravel the Role of Monocytes in Neuroblastoma Bone Marrow Metastasis.},
  journal = {Nature Communications},
  year = {2023},
  volume = {14},
  pages = {3620},
  issn = {2041-1723},
  doi = {10.1038/s41467-023-39210-0},
  keywords = {Humans;Child;Transcriptome;Bone Marrow/pathology;*Bone Marrow Neoplasms/genetics/metabolism/pathology;*Neuroblastoma/metabolism;Epigenomics;Monocytes/metabolism;Tumor Microenvironment/genetics}
}

@ARTICLE{chung2023bcsb102,
  author = {Chung, F.F.-L.~ and Maldonado, S.G.~ and Nemc, A.~ and Bouaoun, L.~ and Cahais, V.~ and Cuenin, C.~ and Salle, A.~ and Johnson, T.~ and Erguner, B.~ and Laplana, M.~ and Datlinger, P.~ and Jeschke, J.~ and Weiderpass, E.~ and Kristensen, V.~ and Delaloge, S.~ and Fuks, F.~ and Risch, A.~ and Ghantous, A.~ and Plass, C.~ and Bock, C.~ and Kaaks, R.~ and Herceg, Z.~},
  title = {Buffy Coat Signatures of Breast Cancer Risk in a Prospective Cohort Study.},
  journal = {Clinical Epigenetics},
  year = {2023},
  volume = {15},
  pages = {102},
  doi = {10.1186/s13148-023-01509-6}
}

@ARTICLE{redl2023ssahs172s172,
  author = {Redl, A.~ and Krausgruber, T.~ and Barreca, D.~ and Lim, C.~ and Doberer, K.~ and Unterluggauer, L.~ and Kleissl, L.~ and Mayerhofer, C.~ and Kopf, A.~ and Weichhart, T.~ and Bock, C.~ and Stary, G.~},
  title = {Single-Cell and Spatial Architecture of Human Tissue Granulomas Reveals an Aberrant Immune-Regulatory Program Underlying Sarcoidosis.},
  journal = {Journal of Investigative Dermatology},
  year = {2023},
  volume = {143},
  number = {5, Suppl: Abstracts 1st International Societies for Investigative Dermatology Meeting (ISID 2023), Tokyo, Japan, 12–13 May 2023},
  pages = {S172},
  issn = {0022-202X},
  url = {https://www.jidonline.org/article/S0022-202X(23)01192-2/fulltext}
}

@ARTICLE{zhu2023tcah20230414536700,
  author = {Zhu, C.~ and Stolz, V.~ and Simonovic, N.~ and Al-Rubaye, O.~ and Vcelkova, T.~ and Moos, V.~ and Hess, L.~ and Hagelkrueys, A.~ and Madern, M.~ and Reiter, W.~ and Meixner, A.~ and Bock, C.~ and Hartl, M.~ and Ellmeier, W.~ and Seiser, C.~},
  title = {Targeting the Catalytic Activity of HDAC1 in T Cells Protects against Experimental Autoimmune Encephalomyelitis.},
  journal = {bioRxiv},
  year = {2023},
  pages = {2023.04.14.536700},
  doi = {10.1101/2023.04.14.536700}
}

@ARTICLE{farlik2023essde102e102,
  author = {Farlik, M.~ and Halbritter, F.~ and Schwentner, R.~ and Jug, G.~ and Fortelny, N.~ and Schnoller, T.~ and Pisa, H.~ and Schuster, L.~ and Reinprecht, A.~ and Czech, T.~ and Gojo, J.~ and Holter, W.~ and Minkov, M.~ and Bauer, W.~ and Simonitsch-Klupp, I.~ and Bock, C.~ and Hutter, C.~},
  title = {Epigenomics and Single-Cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis.},
  journal = {Experimental Dermatology},
  year = {2023},
  volume = {32},
  number = {4, Abstracts Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF) (cancelled), Berlin, Germany, 11–14 March 2020},
  pages = {e102},
  issn = {0906-6705},
  url = {https://onlinelibrary.wiley.com/doi/10.1111/exd.14067}
}

@ARTICLE{akbar2023rnmb236251,
  author = {Akbar, N.~ and Braithwaite, A.T.~ and Corr, E.M.~ and Koelwyn, G.J.~ and van Solingen, C.~ and Cochain, C.~ and Saliba, A.-E.~ and Corbin, A.~ and Pezzolla, D.~ and Møller Jørgensen, M.~ and Bæk, R.~ and Edgar, L.~ and De Villiers, C.~ and Gunadasa-Rohling, M.~ and Banerjee, A.~ and Paget, D.~ and Lee, C.~ and Hogg, E.~ and Costin, A.~ and Dhaliwal, R.~ and Johnson, E.~ and Krausgruber, T.~ and Riepsaame, J.~ and Melling, G.E.~ and Shanmuganathan, M.~ and Bock, C.~ and Carter, D.R.F.~ and Channon, K.M.~ and Riley, P.R.~ and Udalova, I.A.~ and Moore, K.J.~ and Anthony, D.C.~ and Choudhury, R.P.~},
  title = {Rapid Neutrophil Mobilization by VCAM-1+ Endothelial Cell-Derived Extracellular Vesicles.},
  journal = {Cardiovascular Research},
  year = {2023},
  volume = {119},
  number = {1},
  pages = {236--251},
  issn = {1755-3245 0008-6363},
  doi = {10.1093/cvr/cvac012},
  keywords = {Animals;Mice;Myocardial infarction;*Extracellular Vesicles/metabolism;*MicroRNAs/genetics/metabolism;*Myocardial Infarction/metabolism;Endothelial Cells/metabolism;Exosome;Neutrophils/metabolism;Programming;Spleen;Vascular Cell Adhesion Molecule-1/genetics/metabolism}
}

@ARTICLE{pandey2023ertc109245,
  author = {Pandey, R.V.~ and Strobl, J.~ and Redl, A.~ and Unterluggauer, L.~ and Gail, L.~ and Kleissl, L.~ and M{\"u}ller, S.~ and Atzm{\"u}ller, D.~ and Fife-Gernedl, V.~ and Krausgruber, T.~ and Knaus, H.~ and Mitterbauer, M.~ and Wohlfarth, P.~ and Rabitsch, W.~ and Bock, C.~ and Stary, G.~},
  title = {Epigenetic Regulation of T Cell Lineages in Skin and Blood Following Hematopoietic Stem Cell Transplantation.},
  journal = {Clinical Immunology},
  year = {2023},
  volume = {248},
  pages = {109245},
  issn = {1521-7035 1521-6616},
  doi = {10.1016/j.clim.2023.109245},
  keywords = {T cells;Histone deacetylases;Epigenetic regulation;Hematopoietic stem cell transplantation}
}

@ARTICLE{krausgruber2023sstr289306e7,
  author = {Krausgruber, T.~ and Redl, A.~ and Barreca, D.~ and Doberer, K.~ and Romanovskaia, D.~ and Dobnikar, L.~ and Guarini, M.~ and Unterluggauer, L.~ and Kleissl, L.~ and Atzmuller, D.~ and Mayerhofer, C.~ and Kopf, A.~ and Saluzzo, S.~ and Lim, C.X.~ and Rexie, P.~ and Weichhart, T.~ and Bock, C.~ and Stary, G.~},
  title = {Single-Cell and Spatial Transcriptomics Reveal Aberrant Lymphoid Developmental Programs Driving Granuloma Formation.},
  journal = {Immunity},
  year = {2023},
  volume = {56},
  number = {2},
  pages = {289--306.e7},
  doi = {10.1016/j.immuni.2023.01.014}
}

@ARTICLE{pototschnig2023iima93107,
  author = {Pototschnig, I.~ and Feiler, U.~ and Diwoky, C.~ and Vesely, P.W.~ and Rauchenwald, T.~ and Paar, M.~ and Bakiri, L.~ and Pajed, L.~ and Hofer, P.~ and Kashofer, K.~ and Sukhbaatar, N.~ and Schoiswohl, G.~ and Weichhart, T.~ and Hoefler, G.~ and Bock, C.~ and Pichler, M.~ and Wagner, E.F.~ and Zechner, R.~ and Schweiger, M.~},
  title = {Interleukin-6 Initiates Muscle- and Adipose Tissue Wasting in a Novel C57BL/6 Model of Cancer-Associated Cachexia.},
  journal = {Journal of Cachexia, Sarcopenia and Muscle},
  year = {2023},
  volume = {14},
  number = {1},
  pages = {93--107},
  issn = {2190-6009 2190-5991},
  doi = {10.1002/jcsm.13109},
  keywords = {Cancer;Adipose tissue;C57BL/6;Cachexia;Interleukin-6}
}

@ARTICLE{klughammer2023cagb232,
  author = {Klughammer, J.~ and Romanovskaia, D.~ and Nemc, A.~ and Posautz, A.~ and Seid, C.A.~ and Schuster, L.C.~ and Keinath, M.C.~ and Lugo Ramos, J.S.~ and Kosack, L.~ and Evankow, A.~ and Printz, D.~ and Kirchberger, S.~ and Erguner, B.~ and Datlinger, P.~ and Fortelny, N.~ and Schmidl, C.~ and Farlik, M.~ and Skjarven, K.~ and Bergthaler, A.~ and Liedvogel, M.~ and Thaller, D.~ and Burger, P.A.~ and Hermann, M.~ and Distel, M.~ and Distel, D.L.~ and Kubber-Heiss, A.~ and Bock, C.~},
  title = {Comparative Analysis of Genome-Scale, Base-Resolution DNA Methylation Profiles across 580 Animal Species.},
  journal = {Nature Communications},
  year = {2023},
  volume = {14},
  pages = {232},
  doi = {10.1038/s41467-022-34828-y}
}

@ARTICLE{vos20222sdm982746,
  author = {Vos, W.A.J.W.~ and Groenendijk, A.L.~ and Blaauw, M.J.T.~ and van Eekeren, L.E.~ and Navas, A.~ and Cleophas, M.C.P.~ and Vadaq, N.~ and Matzaraki, V.~ and Dos Santos, J.C.~ and Meeder, E.M.G.~ and Fr{\"o}berg, J.~ and Weijers, G.~ and Zhang, Y.~ and Fu, J.~ and Ter Horst, R.~ and Bock, C.~ and Knoll, R.~ and Aschenbrenner, A.C.~ and Schultze, J.~ and Vanderkerckhove, L.~ and Hwandih, T.~ and Wonderlich, E.R.~ and Vemula, S.V.~ and van der Kolk, M.~ and de Vet, S.C.P.~ and Blok, W.L.~ and Brinkman, K.~ and Rokx, C.~ and Schellekens, A.F.A.~ and de Mast, Q.~ and Joosten, L.A.B.~ and Berrevoets, M.A.H.~ and Stalenhoef, J.E.~ and Verbon, A.~ and van Lunzen, J.~ and Netea, M.G.~ and van der Ven, A.J.A.M.~},
  title = {The 2000HIV Study: Design, Multi-Omics Methods and Participant Characteristics.},
  journal = {Frontiers in Immunology},
  year = {2022},
  volume = {13},
  pages = {982746},
  issn = {1664-3224},
  doi = {10.3389/fimmu.2022.982746},
  keywords = {COVID-19;HIV-1;cardiovascular disease;hepatic disease;HIV extreme phenotype;HIV reservoir;multi-omics;non-AIDS comorbidities}
}

@ARTICLE{boccuni2022ssbieabq5389,
  author = {Boccuni, L.~ and Podgorschek, E.~ and Schmiedeberg, M.~ and Platanitis, E.~ and Traxler, P.~ and Fischer, P.~ and Schirripa, A.~ and Novoszel, P.~ and Nebreda, A.R.~ and Arthur, J.S.C.~ and Fortelny, N.~ and Farlik, M.~ and Sexl, V.~ and Bock, C.~ and Sibilia, M.~ and Kovarik, P.~ and Muller, M.~ and Decker, T.~},
  title = {Stress Signaling Boosts Interferon-Induced Gene Transcription in Macrophages.},
  journal = {Science Signaling},
  year = {2022},
  volume = {15},
  number = {764},
  pages = {eabq5389},
  doi = {10.1126/scisignal.abq5389}
}

@ARTICLE{amman2022vvws18141822,
  author = {Amman, F.~ and Markt, R.~ and Endler, L.~ and Hupfauf, S.~ and Agerer, B.~ and Schedl, A.~ and Richter, L.~ and Zechmeister, M.~ and Bicher, M.~ and Heiler, G.~ and Triska, P.~ and Thornton, M.~ and Penz, T.~ and Senekowitsch, M.~ and Laine, J.~ and Keszei, Z.~ and Klimek, P.~ and Nagele, F.~ and Mayr, M.~ and Daleiden, B.~ and Steinlechner, M.~ and Niederstatter, H.~ and Heidinger, P.~ and Rauch, W.~ and Scheffknecht, C.~ and Vogl, G.~ and Weichlinger, G.~ and Wagner, A.O.~ and Slipko, K.~ and Masseron, A.~ and Radu, E.~ and Allerberger, F.~ and Popper, N.~ and Bock, C.~ and Schmid, D.~ and Oberacher, H.~ and Kreuzinger, N.~ and Insam, H.~ and Bergthaler, A.~},
  title = {Viral Variant-Resolved Wastewater Surveillance of SARS-CoV-2 at National Scale.},
  journal = {Nature Biotechnology},
  year = {2022},
  volume = {40},
  number = {12},
  pages = {1814--1822},
  doi = {10.1038/s41587-022-01387-y}
}

@ARTICLE{bock2022hcs8,
  author = {Bock, C.~ and Datlinger, P.~ and Chardon, F.~ and Coelho, M.A.~ and Dong, M.B.~ and Lawson, K.A.~ and Lu, T.~ and Maroc, L.~ and Norman, T.M.~ and Song, B.~ and Stanley, G.~ and Chen, S.~ and Garnett, M.~ and Li, W.~ and Moffat, J.~ and Qi, L.S.~ and Shapiro, R.S.~ and Shendure, J.~ and Weissman, J.S.~ and Zhuang, X.~},
  title = {High-Content CRISPR Screening.},
  journal = {Nature Reviews Methods Primers},
  year = {2022},
  volume = {2},
  pages = {8},
  doi = {10.1038/s43586-021-00093-4},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85130264697\&doi=10.1038%2fs43586-021-00093-4\&partnerID=40\&md5=015e1e149e06c31cdc34c07e6a38ec48}
}

@ARTICLE{seyres2022tems39,
  author = {Seyres, D.~ and Cabassi, A.~ and Lambourne, J.J.~ and Burden, F.~ and Farrow, S.~ and McKinney, H.~ and Batista, J.~ and Kempster, C.~ and Pietzner, M.~ and Slingsby, O.~ and Cao, T.H.~ and Quinn, P.A.~ and Stefanucci, L.~ and Sims, M.C.~ and Rehnstrom, K.~ and Adams, C.L.~ and Frary, A.~ and Erguener, B.~ and Kreuzhuber, R.~ and Mocciaro, G.~ and D´Amore, S.~ and Koulman, A.~ and Grassi, L.~ and Griffin, J.L.~ and Ng, L.L.~ and Park, A.~ and Savage, D.B.~ and Langenberg, C.~ and Bock, C.~ and Downes, K.~ and Wareham, N.J.~ and Allison, M.~ and Vacca, M.~ and Kirk, P.D.W.~ and Frontini, M.~},
  title = {Transcriptional, Epigenetic and Metabolic Signatures in Cardiometabolic Syndrome Defined by Extreme Phenotypes.},
  journal = {Clinical Epigenetics},
  year = {2022},
  volume = {14},
  pages = {39},
  issn = {1868-7083},
  doi = {10.1186/s13148-022-01257-z}
}

@ARTICLE{roetzerpejrimovsky2022lhgpvii118vii119,
  author = {Roetzer-Pejrimovsky, T.~ and Kiesel, B.~ and Nenning, K.~ and Klughammer, J.~ and Rajchl, M.~ and Bock, C.~ and Hainfellner, J.~ and Baumann, B.~ and Langs, G.~ and Woehrer, A.~},
  title = {Linking Histological Glioblastoma Phenotypes to Transcriptional Subtypes and Prognosis Using Deep Learning.},
  journal = {Neuro-Oncology},
  year = {2022},
  volume = {24},
  number = {Suppl 7: Abstracts 27th Annual Scientific Meeting and Education Day of the Society-for-Neuro-Oncology (SNO), Tampa, FL, 16–20 November 2022},
  pages = {vii118--vii119},
  issn = {1522-8517},
  doi = {10.1093/neuonc/noac209.450}
}

@ARTICLE{gogolou2022earhe74263,
  author = {Gogolou, A.~ and Souilhol, C.~ and Granata, I.~ and Wymeersch, F.J.~ and Manipur, I.~ and Wind, M.~ and Frith, T.J.R.~ and Guarini, M.~ and Bertero, A.~ and Bock, C.~ and Halbritter, F.~ and Takasato, M.~ and Guarracino, M.R.~ and Tsakiridis, A.~},
  title = {Early Anteroposterior Regionalisation of Human Neural Crest Is Shaped by a Pro-Mesodermal Factor.},
  journal = {eLife},
  year = {2022},
  volume = {11},
  pages = {e74263},
  issn = {2050-084X},
  doi = {10.7554/eLife.74263},
  keywords = {human;developmental biology;mouse;regenerative medicine;stem cells}
}

@ARTICLE{kivinen2022accfe55734,
  author = {Kivinen, K.~ and van Luenen, H.G.~ and Alcalay, M.~ and Bock, C.~ and Dodzian, J.~ and Hoskova, K.~ and Hoyle, D.~ and Hradil, O.~ and Christensen, S.K.~ and Korn, B.~ and Kosteas, T.~ and Morales, M.~ and Skowronek, K.~ and Theodorou, V.~ and Van Minnebruggen, G.~ and Salamero, J.~ and Premvardhan, L.~},
  title = {Acknowledging and Citing Core Facilities: Key Contributions to Data Lifecycle Should Be Recognised in the Scientific Literature.},
  journal = {EMBO Reports},
  year = {2022},
  volume = {23},
  number = {9},
  pages = {e55734},
  doi = {10.15252/embr.202255734}
}

@ARTICLE{vértesy2022gacre111118,
  author = {Vértesy, Á.~ and Eichm{\"u}ller, O.L.~ and Naas, J.~ and Novatchkova, M.~ and Esk, C.~ and Balmaña, M.~ and Ladstaetter, S.~ and Bock, C.~ and von Haeseler, A.~ and Knoblich, J.A.~},
  title = {Gruffi: An Algorithm for Computational Removal of Stressed Cells from Brain Organoid Transcriptomic Datasets.},
  journal = {EMBO Journal},
  year = {2022},
  volume = {41},
  number = {17},
  pages = {e111118},
  issn = {1460-2075},
  doi = {10.15252/embj.2022111118}
}

@ARTICLE{hamminger2022hd1c298299,
  author = {Hamminger, P.~ and Marchetti, L.~ and Preglej, T.~ and Platzer, R.~ and Zhu, C.~ and Kamnev, A.~ and Rica, R.~ and Stolz, V.~ and Sandner, L.~ and Alteneder, M.~ and Kaba, E.~ and Waltenberger, D.~ and Huppa, J.~ and Trauner, M.~ and Bock, C.~ and Lyck, R.~ and Bauer, J.~ and Dupre, L.~ and Seiser, C.~ and Boucheron, N.~ and Engelhardt, B.~ and Ellmeier, W.~},
  title = {Histone Deacetylase 1 Controls CD4(+) T Cell Trafficking in Autoinflammatory Diseases.},
  journal = {European Journal of Immunology},
  year = {2022},
  volume = {52},
  number = {Suppl 1: Special Issue: Abstracts Joint Meeting of the German Society for Immunology (DGfl) and the Austrian Society for Allergology \& Immunology ({\"O}GAI), Hannover, Germany, 7–10 September 2022},
  pages = {298--299},
  issn = {0014-2980},
  doi = {https://doi.org/10.1002/eji.202270100},
  url = {https://onlinelibrary.wiley.com/doi/epdf/10.1002/eji.202270100#page=298}
}

@ARTICLE{nenning2022rfdmii1ii1,
  author = {Nenning, K.~ and Gesperger, J.~ and Nemc, A.~ and Roetzer-Pejrimovsky, T.~ and Choi, S.~ and Preusser, M.~ and Nam, D.~ and Bock, C.~ and Langs, G.~ and Woehrer, A.~ and {ABTR-PCNSL Study Group}},
  title = {Radiomic Features and DNA Methylation Attributes in Primary CNS Lymphoma.},
  journal = {Neuro-Oncology},
  year = {2022},
  volume = {24},
  number = {Suppl 2: Abstracts 17th Meeting of the European Association of Neuro-Oncology, Vienna, Austria, 15–18 September 2022},
  pages = {ii1},
  issn = {1522-8517},
  doi = {10.1093/neuonc/noac174.000}
}

@ARTICLE{casteels2022slcr111288,
  author = {Casteels, T.~ and Bajew, S.~ and Reiniš, J.~ and Enders, L.~ and Schuster, M.~ and Fontaine, F.~ and M{\"u}ller, A.C.~ and Wagner, B.K.~ and Bock, C.~ and Kubicek, S.~},
  title = {SMNDC1 Links Chromatin Remodeling and Splicing to Regulate Pancreatic Hormone Expression.},
  journal = {Cell Reports},
  year = {2022},
  volume = {40},
  number = {9},
  pages = {111288},
  issn = {2211-1247},
  doi = {10.1016/j.celrep.2022.111288},
  keywords = {splicing;alpha cells;beta cells;chromatin remodelers;CP: Metabolism;CP: Molecular biology;insulin transcription;pancreatic islets;RNAi screen;SMNDC1}
}

@ARTICLE{hess2022atcie1010376,
  author = {Hess, L.~ and Moos, V.~ and Lauber, A.A.~ and Reiter, W.~ and Schuster, M.~ and Hartl, N.~ and Lackner, D.~ and Boenke, T.~ and Koren, A.~ and Guzzardo, P.M.~ and Gundacker, B.~ and Riegler, A.~ and Vician, P.~ and Miccolo, C.~ and Leiter, S.~ and Chandrasekharan, M.B.~ and Vcelkova, T.~ and Tanzer, A.~ and Jun, J.Q.~ and Bradner, J.~ and Brosch, G.~ and Hartl, M.~ and Bock, C.~ and B{\"u}rckst{\"u}mmer, T.~ and Kubicek, S.~ and Chiocca, S.~ and Bhaskara, S.~ and Seiser, C.~},
  title = {A Toolbox for Class I HDACs Reveals Isoform Specific Roles in Gene Regulation and Protein Acetylation.},
  journal = {PLoS Genetics},
  year = {2022},
  volume = {18},
  number = {8},
  pages = {e1010376},
  issn = {1553-7404 1553-7390},
  doi = {10.1371/journal.pgen.1010376}
}

@ARTICLE{deroissart2022idire239e239,
  author = {Deroissart, J.~ and Romanovskaia, D.~ and Derdak, S.~ and Schulte, C.~ and Polzl, D.~ and Jeitler, M.~ and Goderle, L.~ and Bock, C.~ and Bilban, M.~ and Maric, H.~ and Binder, C.~},
  title = {Impact of Dyslipidemia on the IgM Repertoire in Atherosclerotic Mice.},
  journal = {Atherosclerosis},
  year = {2022},
  volume = {355},
  number = {Abstracts EAS Congress 2022, Valencia, Spain, 27 June – 1 July 2022},
  pages = {e239},
  issn = {0021-9150},
  url = {https://www.atherosclerosis-journal.com/article/S0021-9150(22)00967-4/pdf}
}

@ARTICLE{varn2022gpis21842199e16,
  author = {Varn, F.S.~ and Johnson, K.C.~ and Martinek, J.~ and Huse, J.T.~ and Nasrallah, M.P.~ and Wesseling, P.~ and Cooper, L.A.D.~ and Malta, T.M.~ and Wade, T.E.~ and Sabedot, T.S.~ and Brat, D.~ and Gould, P.V.~ and W{\"o}ehrer, A.~ and Aldape, K.~ and Ismail, A.~ and Sivajothi, S.K.~ and Barthel, F.P.~ and Kim, H.~ and Kocakavuk, E.~ and Ahmed, N.~ and White, K.~ and Datta, I.~ and Moon, H.-E.~ and Pollock, S.~ and Goldfarb, C.~ and Lee, G.-H.~ and Garofano, L.~ and Anderson, K.J.~ and Nehar-Belaid, D.~ and Barnholtz-Sloan, J.S.~ and Bakas, S.~ and Byrne, A.T.~ and D´Angelo, F.~ and Gan, H.K.~ and Khasraw, M.~ and Migliozzi, S.~ and Ormond, D.R.~ and Paek, S.H.~ and Van Meir, E.G.~ and Walenkamp, A.M.E.~ and Watts, C.~ and Weiss, T.~ and Weller, M.~ and Palucka, K.~ and Stead, L.F.~ and Poisson, L.M.~ and Noushmehr, H.~ and Iavarone, A.~ and Verhaak, R.G.W.~ and {GLASS Consortium}},
  title = {Glioma Progression Is Shaped by Genetic Evolution and Microenvironment Interactions.},
  journal = {Cell},
  year = {2022},
  volume = {185},
  number = {12},
  pages = {2184--2199.e16},
  issn = {1097-4172 0092-8674},
  doi = {10.1016/j.cell.2022.04.038},
  keywords = {genomics;glioblastoma;glioma;hypermutation;macrophages;microenvironment;neurons;single-cell;spatial imaging;treatment resistance}
}

@ARTICLE{radu2022esal118257,
  author = {Radu, E.~ and Masseron, A.~ and Amman, F.~ and Schedl, A.~ and Agerer, B.~ and Endler, L.~ and Penz, T.~ and Bock, C.~ and Bergthaler, A.~ and Vierheilig, J.~ and Hufnagl, P.~ and Korschineck, I.~ and Krampe, J.~ and Kreuzinger, N.~},
  title = {Emergence of SARS-CoV-2 Alpha Lineage and Its Correlation with Quantitative Wastewater-Based Epidemiology Data.},
  journal = {Water Research},
  year = {2022},
  volume = {215},
  pages = {118257},
  issn = {1879-2448},
  doi = {10.1016/j.watres.2022.118257}
}

@ARTICLE{milosevicfeenstra2022pocw390400,
  author = {Milosevic Feenstra, J.D.~ and J{\"a}ger, R.~ and Schischlik, F.~ and Ivanov, D.~ and Eisenwort, G.~ and Rumi, E.~ and Schuster, M.~ and Gisslinger, B.~ and Machherndl-Spandl, S.~ and Bettelheim, P.~ and Krauth, M.-T.~ and Keil, F.~ and Bock, C.~ and Cazzola, M.~ and Gisslinger, H.~ and Kralovics, R.~ and Valent, P.~},
  title = {PD-L1 Overexpression Correlates with JAK2-V617F Mutational Burden and Is Associated with 9p Uniparental Disomy in Myeloproliferative Neoplasms.},
  journal = {American Journal of Hematology},
  year = {2022},
  volume = {97},
  number = {4},
  pages = {390--400},
  issn = {1096-8652 0361-8609},
  doi = {10.1002/ajh.26461}
}

@ARTICLE{stolz2022nrc120220324485609,
  author = {Stolz, V.~ and Rica, R.~ and Zhu, C.~ and Preglej, T.~ and Hamminger, P.~ and Hainberger, D.~ and Alteneder, M.~ and M{\"u}ller, L.~ and Waltenberger, D.~ and Hladik, A.~ and Agerer, B.~ and Schuster, M.~ and Frey, T.~ and Krausgruber, T.~ and Boucheron, N.~ and Knapp, S.~ and Schmetterer, K.~ and Trauner, M.~ and Bergthaler, A.~ and Bock, C.~ and Ellmeier, W.~},
  title = {Nuclear Receptor Corepressor 1 Controls Regulatory T Cell Subset Differentiation and Effector Function.},
  journal = {bioRxiv},
  year = {2022},
  pages = {2022.03.24.485609},
  url = {https://www.biorxiv.org/content/10.1101/2022.03.24.485609v2}
}

@ARTICLE{bangert2022canp850494,
  author = {Bangert, C.~ and Villazala-Merino, S.~ and Fahrenberger, M.~ and Krausgruber, T.~ and Bauer, W.M.~ and Stanek, V.~ and Campion, N.J.~ and Bartosik, T.~ and Quint, T.~ and Regelsberger, G.~ and Niederberger-Leppin, V.~ and Bock, C.~ and Schneider, S.~ and Eckl-Dorna, J.~},
  title = {Comprehensive Analysis of Nasal Polyps Reveals a More Pronounced Type 2 Transcriptomic Profile of Epithelial Cells and Mast Cells in Aspirin-Exacerbated Respiratory Disease.},
  journal = {Frontiers in Immunology},
  year = {2022},
  volume = {13},
  pages = {850494},
  issn = {1664-3224},
  doi = {10.3389/fimmu.2022.850494},
  keywords = {Humans;Transcriptome;Chronic Disease;Inflammation/pathology;*Asthma;Aspirin-Induced/genetics/pathology;*Eosinophilia/pathology;*Nasal Polyps/metabolism;*Sinusitis;aspirin-exacerbated respiratory disease;Aspirin/adverse effects;chronic rhinosinusitis with nasal polyps;Epithelial Cells/metabolism;mast cells;Mast Cells/metabolism;scRNA-seq analysis;type 2 immunity}
}

@ARTICLE{peneder2022ldesvbac017,
  author = {Peneder, P.~ and Bock, C.~ and Tomazou, E.M.~},
  title = {LIQUORICE: Detection of Epigenetic Signatures in Liquid Biopsies Based on Whole-Genome Sequencing Data.},
  journal = {Bioinformatics Advances},
  year = {2022},
  volume = {2},
  pages = {vbac017},
  issn = {2635-0041},
  doi = {10.1093/bioadv/vbac017},
  url = {https://doi.org/10.1093/bioadv/vbac017}
}

@ARTICLE{redl2022ssahe69e70,
  author = {Redl, A.~ and Krausgruber, T.~ and Barreca, D.~ and Doberer, K.~ and Unterluggauer, L.~ and Kleissl, L.~ and Atzmuller, D.~ and Mayerhofer, C.~ and Kopf, A.~ and Weichhart, T.~ and Bock, C.~ and Stary, G.~},
  title = {Single-Cell and Spatial Architecture of Human Tissue Granulomas Reveals an Aberrant Immune-Regulatory Program Underlying Sarcoidosis.},
  journal = {Experimental Dermatology},
  year = {2022},
  volume = {31},
  number = {2, Abstracts 48th Annual Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF), Virtual, 23–26 February 2022},
  pages = {e69--e70},
  issn = {0906-6705},
  doi = {10.1111/exd.14511}
}

@ARTICLE{alkon2022sari624639,
  author = {Alkon, N.~ and Bauer, W.~ and Krausgruber, T.~ and Goh, I.~ and Griss, J.~ and Nguyen, V.~ and Reininger, B.~ and Bangert, C.~ and Staud, C.~ and Brunner, P.M.~ and Bock, C.~ and Haniffa, M.~ and Stingl, G.~},
  title = {Single-Cell Analysis Reveals Innate Lymphoid Cell Lineage Infidelity in Atopic Dermatitis.},
  journal = {Journal of Allergy and Clinical Immunology},
  year = {2022},
  volume = {149},
  number = {2},
  pages = {624--639},
  issn = {1097-6825 0091-6749},
  doi = {10.1016/j.jaci.2021.07.025},
  keywords = {atopic dermatitis;human skin;Innate lymphoid cells;single-cell RNA-sequencing}
}

@ARTICLE{haimel2022cehp369378,
  author = {Haimel, M.~ and Pazmandi, J.~ and Heredia, R.J.~ and Dmytrus, J.~ and Bal, S.K.~ and Zoghi, S.~ and van Daele, P.~ and Briggs, T.A.~ and Wouters, C.~ and Bader-Meunier, B.~ and Aeschlimann, F.A.~ and Caorsi, R.~ and Eleftheriou, D.~ and Hoppenreijs, E.~ and Salzer, E.~ and Bakhtiar, S.~ and Derfalvi, B.~ and Saettini, F.~ and Kusters, M.A.A.~ and Elfeky, R.~ and Tr{\"u}ck, J.~ and Rivière, J.G.~ and van der Burg, M.~ and Gattorno, M.~ and Seidel, M.G.~ and Burns, S.~ and Warnatz, K.~ and Hauck, F.~ and Brogan, P.~ and Gilmour, K.C.~ and Schuetz, C.~ and Simon, A.~ and Bock, C.~ and Hambleton, S.~ and de Vries, E.~ and Robinson, P.~ and van Gijn, M.~ and Boztug, K.~},
  title = {Curation and Expansion of Human Phenotype Ontology for Defined Groups of Inborn Errors of Immunity.},
  journal = {Journal of Allergy and Clinical Immunology},
  year = {2022},
  volume = {149},
  number = {1},
  pages = {369--378},
  issn = {1097-6825 0091-6749},
  doi = {10.1016/j.jaci.2021.04.033},
  keywords = {rare diseases;diagnostic support;disease classification;genetic analysis;HPO;immune deficiencies;inborn errors of immunity;ontology;patient matching;phenotype}
}

@ARTICLE{lehmann2021caife1027,
  author = {Lehmann, D.~ and Unterthurner, S.~ and Berg, V.~ and Hock, K.~ and Ponnuswamy, P.~ and Malisauskas, M.~ and Crowe, B.A.~ and Erguener, B.~ and Bock, C.~ and Hather, G.~ and Reipert, B.M.~ and Bilic, I.~},
  title = {Comprehensive Approach for Identification of Functional FCGR2C Alleles Resulting in Protein Expression as a Determinant for Predicting Predisposition to Autoimmunity.},
  journal = {ImmunoMedicine},
  year = {2021},
  volume = {1},
  number = {2},
  pages = {e1027},
  issn = {2510-5345},
  doi = {10.1002/imed.1027},
  url = {https://doi.org/10.1002/imed.1027},
  keywords = {SNP;copy number variation;FCGR2C expression;low affinity immunoglobulin receptors;systemic lupus erythematosus}
}

@ARTICLE{casteels2021ibcd101329,
  author = {Casteels, T.~ and Zhang, Y.~ and Frogne, T.~ and Sturtzel, C.~ and Lardeau, C.-H.~ and Sen, I.~ and Liu, X.~ and Hong, S.~ and Pauler, F.M.~ and Penz, T.~ and Brandstetter, M.~ and Barbieux, C.~ and Berishvili, E.~ and Heuser, T.~ and Bock, C.~ and Riedel, C.G.~ and Meyer, D.~ and Distel, M.~ and Hecksher-Sørensen, J.~ and Li, J.~ and Kubicek, S.~},
  title = {An Inhibitor-Mediated Beta Cell Dedifferentiation Model Reveals Distinct Roles for FoxO1 in Glucagon Repression and Insulin Maturation.},
  journal = {Molecular Metabolism},
  year = {2021},
  volume = {54},
  pages = {101329},
  issn = {2212-8778},
  doi = {10.1016/j.molmet.2021.101329},
  keywords = {Diabetes/Beta Cell Dedifferentiation/FoxO1 inhibitor/Loperamide}
}

@ARTICLE{alkon2021saul3435,
  author = {Alkon, N.~ and Bauer, W.~ and Krausgruber, T.~ and Goh, I.~ and Griss, J.~ and Nguyen, V.~ and Reininger, B.~ and Bangert, C.~ and Staud, C.~ and Brunner, P.~ and Bock, C.~ and Haniffa, M.~ and Stingl, G.~},
  title = {Single-Cell Analysis Unravels Lineage Plasticity of Innate Lymphoid Cells in Atopic Dermatitis.},
  journal = {Experimental Dermatology},
  year = {2021},
  volume = {30},
  number = {Suppl 2: Abstracts 4th Inflammatory Skin Disease Summit, New York, NY, 3–6 November 2021},
  pages = {34--35},
  issn = {0906-6705},
  url = {https://onlinelibrary.wiley.com/doi/10.1111/exd.14457}
}

@ARTICLE{strobl2021hrmte20210417,
  author = {Strobl, J.~ and Gail, L.M.~ and Kleissl, L.~ and Pandey, R.V.~ and Smejkal, V.~ and Huber, J.~ and Puxkandl, V.~ and Unterluggauer, L.~ and Dingelmaier-Hovorka, R.~ and Atzm{\"u}ller, D.~ and Krausgruber, T.~ and Bock, C.~ and Wohlfarth, P.~ and Rabitsch, W.~ and Stary, G.~},
  title = {Human Resident Memory T Cells Exit the Skin and Mediate Systemic Th2-Driven Inflammation.},
  journal = {Journal of Experimental Medicine},
  year = {2021},
  volume = {218},
  number = {11},
  pages = {e20210417},
  issn = {1540-9538 0022-1007},
  doi = {10.1084/jem.20210417}
}

@ARTICLE{nicholson2021rtcgeabj3222,
  author = {Nicholson, M.D.~ and Endler, L.~ and Popa, A.~ and Genger, J.-W.~ and Bock, C.~ and Michor, F.~ and Bergthaler, A.~},
  title = {Response to Comment on “Genomic Epidemiology of Superspreading Events in Austria Reveals Mutational Dynamics and Transmission Properties of SARS-CoV-2”.},
  journal = {Science Translational Medicine},
  year = {2021},
  volume = {13},
  number = {617},
  pages = {eabj3222},
  issn = {1946-6242 1946-6234},
  doi = {10.1126/scitranslmed.abj3222}
}

@ARTICLE{strobl2021smtcs149s149,
  author = {Strobl, J.~ and Gail, L.~ and Kleissl, L.~ and Pandey, R.~ and Krausgruber, T.~ and Atzm{\"u}ller, D.~ and Wohlfarth, P.~ and Bock, C.~ and Rabitsch, W.~ and Stary, G.~},
  title = {Skin-Resident Memory T Cells Are Poised for Systemic Th2/Th17-Driven Inflammation and May Re-Seed at Distant Sites during Graft-Versus-Host Disease.},
  journal = {Journal of Investigative Dermatology},
  year = {2021},
  volume = {141},
  number = {10, Suppl: Abstracts 50th Annual European Society for Dermatological Research (ESDR) Meeting 2021, Virtual, 22–25 September 2021},
  pages = {S149},
  issn = {0022-202X},
  url = {https://www.jidonline.org/article/S0022-202X(21)01692-4/pdf}
}

@ARTICLE{edgar2021hiti961982,
  author = {Edgar, L.~ and Akbar, N.~ and Braithwaite, A.T.~ and Krausgruber, T.~ and Gallart-Ayala, H.~ and Bailey, J.~ and Corbin, A.L.~ and Khoyratty, T.E.~ and Chai, J.T.~ and Alkhalil, M.~ and Rendeiro, A.F.~ and Ziberna, K.~ and Arya, R.~ and Cahill, T.J.~ and Bock, C.~ and Laurencikiene, J.~ and Crabtree, M.J.~ and Lemieux, M.E.~ and Riksen, N.P.~ and Netea, M.G.~ and Wheelock, C.E.~ and Channon, K.M.~ and Rydén, M.~ and Udalova, I.A.~ and Carnicer, R.~ and Choudhury, R.P.~},
  title = {Hyperglycemia Induces Trained Immunity in Macrophages and Their Precursors and Promotes Atherosclerosis.},
  journal = {Circulation},
  year = {2021},
  volume = {144},
  number = {12},
  pages = {961--982},
  issn = {1524-4539 0009-7322},
  doi = {10.1161/CIRCULATIONAHA.120.046464},
  keywords = {memory;hyperglycemia;trained immunity;vascular}
}

@ARTICLE{min2021gpia13111321,
  author = {Min, J.L.~ and Hemani, G.~ and Hannon, E.~ and Dekkers, K.F.~ and Castillo-Fernandez, J.~ and Luijk, R.~ and Carnero-Montoro, E.~ and Lawson, D.J.~ and Burrows, K.~ and Suderman, M.~ and Bretherick, A.D.~ and Richardson, T.G.~ and Klughammer, J.~ and Iotchkova, V.~ and Sharp, G.~ and Al Khleifat, A.~ and Shatunov, A.~ and Iacoangeli, A.~ and McArdle, W.L.~ and Ho, K.M.~ and Kumar, A.~ and S{\"o}derh{\"a}ll, C.~ and Soriano-Tárraga, C.~ and Giralt-Steinhauer, E.~ and Kazmi, N.~ and Mason, D.~ and McRae, A.F.~ and Corcoran, D.L.~ and Sugden, K.~ and Kasela, S.~ and Cardona, A.~ and Day, F.R.~ and Cugliari, G.~ and Viberti, C.~ and Guarrera, S.~ and Lerro, M.~ and Gupta, R.~ and Bollepalli, S.~ and Mandaviya, P.~ and Zeng, Y.~ and Clarke, T.-K.~ and Walker, R.M.~ and Schmoll, V.~ and Czamara, D.~ and Ruiz-Arenas, C.~ and Rezwan, F.I.~ and Marioni, R.E.~ and Lin, T.~ and Awaloff, Y.~ and Germain, M.~ and Aïssi, D.~ and Zwamborn, R.~ and van Eijk, K.~ and Dekker, A.~ and van Dongen, J.~ and Hottenga, J.-J.~ and Willemsen, G.~ and Xu, C.-J.~ and Barturen, G.~ and Català-Moll, F.~ and Kerick, M.~ and Wang, C.~ and Melton, P.~ and Elliott, H.R.~ and Shin, J.~ and Bernard, M.~ and Yet, I.~ and Smart, M.~ and Gorrie-Stone, T.~ and Shaw, C.~ and Al Chalabi, A.~ and Ring, S.M.~ and Pershagen, G.~ and Melén, E.~ and Jiménez-Conde, J.~ and Roquer, J.~ and Lawlor, D.A.~ and Wright, J.~ and Martin, N.G.~ and Montgomery, G.W.~ and Moffitt, T.E.~ and Poulton, R.~ and Esko, T.~ and Milani, L.~ and Metspalu, A.~ and Perry, J.R.B.~ and Ong, K.K.~ and Wareham, N.J.~ and Matullo, G.~ and Sacerdote, C.~ and Panico, S.~ and Caspi, A.~ and Arseneault, L.~ and Gagnon, F.~ and Ollikainen, M.~ and Kaprio, J.~ and Felix, J.F.~ and Rivadeneira, F.~ and Tiemeier, H.~ and van IJzendoorn, M.H.~ and Uitterlinden, A.G.~ and Jaddoe, V.W.V.~ and Haley, C.~ and McIntosh, A.M.~ and Evans, K.L.~ and Murray, A.~ and R{\"a}ikk{\"o}nen, K.~ and Lahti, J.~ and Nohr, E.A.~ and Sørensen, T.I.A.~ and Hansen, T.~ and Morgen, C.S.~ and Binder, E.B.~ and Lucae, S.~ and Gonzalez, J.R.~ and Bustamante, M.~ and Sunyer, J.~ and Holloway, J.W.~ and Karmaus, W.~ and Zhang, H.~ and Deary, I.J.~ and Wray, N.R.~ and Starr, J.M.~ and Beekman, M.~ and van Heemst, D.~ and Slagboom, P.E.~ and Morange, P.-E.~ and Trégouët, D.-A.~ and Veldink, J.H.~ and Davies, G.E.~ and de Geus, E.J.C.~ and Boomsma, D.I.~ and Vonk, J.M.~ and Brunekreef, B.~ and Koppelman, G.H.~ and Alarcón-Riquelme, M.E.~ and Huang, R.-C.~ and Pennell, C.E.~ and van Meurs, J.~ and Ikram, M.A.~ and Hughes, A.D.~ and Tillin, T.~ and Chaturvedi, N.~ and Pausova, Z.~ and Paus, T.~ and Spector, T.D.~ and Kumari, M.~ and Schalkwyk, L.C.~ and Visscher, P.M.~ and Davey Smith, G.~ and Bock, C.~ and Gaunt, T.R.~ and Bell, J.T.~ and Heijmans, B.T.~ and Mill, J.~ and Relton, C.L.~},
  title = {Genomic and Phenotypic Insights from an Atlas of Genetic Effects on DNA Methylation.},
  journal = {Nature Genetics},
  year = {2021},
  volume = {53},
  number = {9},
  pages = {1311--1321},
  issn = {1546-1718 1061-4036},
  doi = {10.1038/s41588-021-00923-x}
}

@ARTICLE{leber2021rease045225,
  author = {Leber, W.~ and Lammel, O.~ and Redlberger-Fritz, M.~ and Mustafa-Korninger, M.E.~ and Glehr, R.C.~ and Camp, J.~ and Agerer, B.~ and Lercher, A.~ and Popa, A.~ and Genger, J.-W.~ and Penz, T.~ and Aberle, S.~ and Bock, C.~ and Bergthaler, A.~ and Stiasny, K.~ and Hochstrasser, E.-M.~ and Hoellinger, C.~ and Siebenhofer, A.~ and Griffiths, C.~ and Panovska-Griffiths, J.~},
  title = {Rapid, Early and Accurate SARS-CoV-2 Detection Using RT-qPCR in Primary Care: A Prospective Cohort Study (REAP-1).},
  journal = {BMJ Open},
  year = {2021},
  volume = {11},
  number = {8},
  pages = {e045225},
  issn = {2044-6055},
  doi = {10.1136/bmjopen-2020-045225},
  keywords = {Humans;Sensitivity and Specificity;Cohort Studies;Prospective Studies;Austria;Primary Health Care;*COVID-19;*public health;*SARS-CoV-2;*primary care;*virology}
}

@ARTICLE{bock2021lipf1515,
  author = {Bock, C.~},
  title = {Looking into the Past and Future of Cells: Single-Cell Analysis of Epigenetic Cell States in Immunology and Cancer.},
  journal = {European Journal of Immunology},
  year = {2021},
  volume = {51},
  number = {Suppl 1: Abstracts 6th European Congress of Immunology, Virtual Meeting, 1–4 September 2021},
  pages = {15},
  issn = {0014-2980},
  url = {https://onlinelibrary.wiley.com/toc/15214141/2021/51/S1}
}

@ARTICLE{strobl2021rtmt7373,
  author = {Strobl, J.~ and Gail, L.M.~ and Kleissl, L.~ and Pandey, R.V.~ and Atzmuller, D.~ and Krausgruber, T.~ and Smejkal, V.~ and Huber, J.~ and Bock, C.~ and Wohlfarth, P.~ and Rabitsch, W.~ and Stary, G.~},
  title = {Re-Circulating Tissue-Resident Memory T Cells Are Poised for a Systemic Th2-Driven Host-Versus-Graft Reaction after Human Allogeneic Hematopoietic Stem Cell Transplantation.},
  journal = {European Journal of Immunology},
  year = {2021},
  volume = {51},
  number = {Suppl 1: Abstracts 6th European Congress of Immunology, Virtual Meeting, 1–4 September 2021},
  pages = {73},
  issn = {0014-2980},
  url = {https://onlinelibrary.wiley.com/toc/15214141/2021/51/S1}
}

@ARTICLE{hamminger2021hd1c176176,
  author = {Hamminger, P.~ and Marchetti, L.~ and Preglej, T.~ and Platzer, R.~ and Zhu, C.~ and Kamnev, A.~ and Rica, R.~ and Stolz, V.~ and Sandner, L.~ and Alteneder, M.~ and Kaba, E.~ and Waltenberger, D.~ and Huppa, J.~ and Trauner, M.~ and Bock, C.~ and Lyck, R.~ and Bauer, J.~ and Dupré, L.~ and Seiser, C.~ and Boucheron, N.~ and Engelhardt, B.~ and Ellmeier, W.~},
  title = {Histone Deacetylase 1 Controls CD4+T Cell Trafficking in Autoinflammatory Disease.},
  journal = {European Journal of Immunology},
  year = {2021},
  volume = {51},
  number = {Suppl 1: Abstracts 6th European Congress of Immunology, Virtual Meeting, 1–4 September 2021},
  pages = {176},
  issn = {0014-2980},
  url = {https://onlinelibrary.wiley.com/toc/15214141/2021/51/S1}
}

@ARTICLE{guelich2021cibm240240,
  author = {G{\"u}lich, A.F.~ and Rica, R.~ and Tizian, C.~ and Viczenczova, C.~ and Khamina, K.~ and Faux, T.~ and Hainberger, D.~ and Penz, T.~ and Bosselut, R.~ and Bock, C.~ and Laiho, A.~ and Elo, L.L.~ and Bergthaler, A.~ and Ellmeier, W.~ and Sakaguchi, S.~},
  title = {Complex Interplay between MAZR and Runx3 Regulates the Generation of Cytotoxic T Lymphocyte and Memory T Cells.},
  journal = {European Journal of Immunology},
  year = {2021},
  volume = {51},
  number = {Suppl 1: Abstracts 6th European Congress of Immunology, Virtual Meeting, 1–4 September 2021},
  pages = {240},
  issn = {0014-2980},
  url = {https://onlinelibrary.wiley.com/toc/15214141/2021/51/S1}
}

@ARTICLE{jia2021hdsi137,
  author = {Jia, R.~ and Kutzner, L.~ and Koren, A.~ and Runggatscher, K.~ and Májek, P.~ and M{\"u}ller, A.C.~ and Schuster, M.~ and Bock, C.~ and Loizou, J.I.~ and Kubicek, S.~ and Kralovics, R.~},
  title = {High-Throughput Drug Screening Identifies the ATR-CHK1 Pathway as a Therapeutic Vulnerability of CALR Mutated Hematopoietic Cells.},
  journal = {Blood Cancer Journal},
  year = {2021},
  volume = {11},
  number = {7},
  pages = {137},
  issn = {2044-5385},
  doi = {10.1038/s41408-021-00531-2}
}

@ARTICLE{oezkan2021hmss2021072221259587,
  author = {{\"O}zkan, E.~ and Strobl, M.M.~ and Novatchkova, M.~ and Yelagandula, R.~ and Albanese, T.G.~ and Triska, P.~ and Endler, Lukas.~ and Penz, T.~ and Patocka, T.~ and Felsenstein, V.~ and Vogt, A.~ and Tamir, I.~ and Seitz, T.~ and F{\"o}dinger, M.~ and Herwig, R.~ and Indra, A.~ and Schmid, D.~ and Bock, C.~ and Bergthaler, A.~ and Stark, A.~ and Allerberger, F.~ and Elling, U.~ and Cochella, L.~},
  title = {High-Throughput Mutational Surveillance of the SARS-CoV-2 Spike Gene.},
  journal = {medRxiv},
  year = {2021},
  pages = {2021.07.22.21259587},
  url = {http://medrxiv.org/content/early/2021/07/24/2021.07.22.21259587.abstract}
}

@ARTICLE{santini2021gimb3804,
  author = {Santini, L.~ and Halbritter, F.~ and Titz-Teixeira, F.~ and Suzuki, T.~ and Asami, M.~ and Ma, X.~ and Ramesmayer, J.~ and Lackner, A.~ and Warr, N.~ and Pauler, F.~ and Hippenmeyer, S.~ and Laue, E.~ and Farlik, M.~ and Bock, C.~ and Beyer, A.~ and Perry, A.C.F.~ and Leeb, M.~},
  title = {Genomic Imprinting in Mouse Blastocysts Is Predominantly Associated with H3K27me3.},
  journal = {Nature Communications},
  year = {2021},
  volume = {12},
  pages = {3804},
  issn = {2041-1723},
  doi = {10.1038/s41467-021-23510-4}
}

@ARTICLE{achyutuni2021heac698707,
  author = {Achyutuni, S.~ and Nivarthi, H.~ and Majoros, A.~ and Hug, E.~ and Schueller, C.~ and Jia, R.~ and Varga, C.~ and Schuster, M.~ and Senekowitsch, M.~ and Tsiantoulas, D.~ and Kavirayani, A.~ and Binder, C.J.~ and Bock, C.~ and Zagrijtschuk, O.~ and Kralovics, R.~},
  title = {Hematopoietic Expression of a Chimeric Murine-Human CALR Oncoprotein Allows the Assessment of Anti-CALR Antibody Immunotherapies in Vivo.},
  journal = {American Journal of Hematology},
  year = {2021},
  volume = {96},
  number = {6},
  pages = {698--707},
  issn = {1096-8652 0361-8609},
  doi = {10.1002/ajh.26171},
  keywords = {Animals;Mice;Transcriptome;Immunotherapy;Mice;Inbred C57BL;*Disease Models;Animal;Mice;Transgenic;Exons/genetics;Sequence Deletion;*Molecular Targeted Therapy;Antibodies;Monoclonal/immunology/*therapeutic use;Blood Platelets/immunology/metabolism;Calreticulin/*antagonists \& inhibitors/genetics/immunology/physiology;Frameshift Mutation;Gene Knock-In Techniques;Hematopoietic Stem Cells/*metabolism;Radiation Chimera;Recombinant Fusion Proteins/genetics/metabolism;Splenomegaly/etiology;Thrombocythemia;Essential/blood/complications/genetics/*therapy}
}

@ARTICLE{datlinger2021usrs635642,
  author = {Datlinger, P.~ and Rendeiro, A.F.~ and Boenke, T.~ and Senekowitsch, M.~ and Krausgruber, T.~ and Barreca, D.~ and Bock, C.~},
  title = {Ultra-High-Throughput Single-Cell RNA Sequencing and Perturbation Screening with Combinatorial Fluidic Indexing.},
  journal = {Nature Methods},
  year = {2021},
  volume = {18},
  number = {6},
  pages = {635--642},
  issn = {1548-7105 1548-7091},
  doi = {10.1038/s41592-021-01153-z}
}

@ARTICLE{peneder2021macd3230,
  author = {Peneder, P.~ and St{\"u}tz, A.M.~ and Surdez, D.~ and Krumbholz, M.~ and Semper, S.~ and Chicard, M.~ and Sheffield, N.C.~ and Pierron, G.~ and Lapouble, E.~ and T{\"o}tzl, M.~ and Erg{\"u}ner, B.~ and Barreca, D.~ and Rendeiro, A.F.~ and Agaimy, A.~ and Boztug, H.~ and Engstler, G.~ and Dworzak, M.~ and Bernkopf, M.~ and Taschner-Mandl, S.~ and Ambros, I.M.~ and Myklebost, O.~ and Marec-Bérard, P.~ and Burchill, S.A.~ and Brennan, B.~ and Strauss, S.J.~ and Whelan, J.~ and Schleiermacher, G.~ and Schaefer, C.~ and Dirksen, U.~ and Hutter, C.~ and Boye, K.~ and Ambros, P.F.~ and Delattre, O.~ and Metzler, M.~ and Bock, C.~ and Tomazou, E.M.~},
  title = {Multimodal Analysis of Cell-Free DNA Whole-Genome Sequencing for Pediatric Cancers with Low Mutational Burden.},
  journal = {Nature Communications},
  year = {2021},
  volume = {12},
  pages = {3230},
  issn = {2041-1723},
  doi = {10.1038/s41467-021-23445-w},
  keywords = {Adolescent;Adult;Female;Humans;Male;Young Adult;Middle Aged;Case-Control Studies;Mutation;Child;Infant;Child;Preschool;DNA Mutational Analysis;Biomarkers;Tumor/*blood/genetics;Bone Neoplasms/blood/*diagnosis/genetics/pathology;Circulating Tumor DNA/*blood/genetics;Liquid Biopsy/methods;Sarcoma;Ewing/blood/*diagnosis/genetics/pathology;Whole Genome Sequencing}
}

@ARTICLE{bangert2021pmdcs115s115,
  author = {Bangert, C.~ and Rindler, K.~ and Krausgruber, T.~ and Alkon, N.~ and Thaler, F.~ and Ayub, T.~ and Vorstandlechner, V.~ and Bauer, W.~ and Mildner, M.~ and Elbe-Buerger, A.~ and Griss, J.~ and Bock, C.~ and Brunner, P.~},
  title = {Persistence of Mature Dendritic Cells, Th2A and Tc2 Cells Characterize Clinically Resolved Atopic Dermatitis under IL-4R-Alpha Blockade.},
  journal = {Journal of Investigative Dermatology},
  year = {2021},
  volume = {141},
  number = {5, Suppl: Abstracts 2021 Society for Investigative Dermatology (SID) Meeting, Virtual, 3–8 May 2021},
  pages = {S115},
  issn = {0022-202X},
  url = {https://www.jidonline.org/article/S0022-202X(21)00914-3/pdf}
}

@ARTICLE{hamminger2021hd1c102610,
  author = {Hamminger, P.~ and Marchetti, L.~ and Preglej, T.~ and Platzer, R.~ and Zhu, C.~ and Kamnev, A.~ and Rica, R.~ and Stolz, V.~ and Sandner, L.~ and Alteneder, M.~ and Kaba, E.~ and Waltenberger, D.~ and Huppa, J.B.~ and Trauner, M.~ and Bock, C.~ and Lyck, R.~ and Bauer, J.~ and Dupré, L.~ and Seiser, C.~ and Boucheron, N.~ and Engelhardt, B.~ and Ellmeier, W.~},
  title = {Histone Deacetylase 1 Controls CD4(+) T Cell Trafficking in Autoinflammatory Diseases.},
  journal = {Journal of Autoimmunity},
  year = {2021},
  volume = {119},
  pages = {102610},
  issn = {1095-9157 0896-8411},
  doi = {10.1016/j.jaut.2021.102610},
  keywords = {Adoptive CD4(+) T cell transfer colitis;Experimental autoimmune encephalomyelitis;Histone deacetylases;T cell migration}
}

@ARTICLE{steindl2021tmbi100057,
  author = {Steindl, A.~ and Alpar, D.~ and Heller, G.~ and Mair, M.J.~ and Gatterbauer, B.~ and Dieckmann, K.~ and Widhalm, G.~ and Hainfellner, J.A.~ and Schmidinger, M.~ and Bock, C.~ and M{\"u}llauer, L.~ and Preusser, M.~ and Berghoff, A.S.~},
  title = {Tumor Mutational Burden and Immune Infiltrates in Renal Cell Carcinoma and Matched Brain Metastases.},
  journal = {ESMO Open},
  year = {2021},
  volume = {6},
  number = {2},
  pages = {100057},
  issn = {2059-7029},
  doi = {10.1016/j.esmoop.2021.100057},
  url = {https://www.sciencedirect.com/science/article/pii/S2059702921000119},
  keywords = {brain metastases of renal cell carcinoma;tumor microenvironment in renal cell carcinoma;tumor mutational burden in brain metastases;tumor-infiltrating lymphocytes in brain metastases}
}

@ARTICLE{guelich2021cibm535039,
  author = {G{\"u}lich, A.F.~ and Rica, R.~ and Tizian, C.~ and Viczenczova, C.~ and Khamina, K.~ and Faux, T.~ and Hainberger, D.~ and Penz, T.~ and Bosselut, R.~ and Bock, C.~ and Laiho, A.~ and Elo, L.L.~ and Bergthaler, A.~ and Ellmeier, W.~ and Sakaguchi, S.~},
  title = {Complex Interplay between MAZR and Runx3 Regulates the Generation of Cytotoxic T Lymphocyte and Memory T Cells.},
  journal = {Frontiers in Immunology},
  year = {2021},
  volume = {12},
  pages = {535039},
  issn = {1664-3224},
  doi = {10.3389/fimmu.2021.535039},
  keywords = {cytotoxic T lymphocyte;LCMV;MAZR/PATZ1;memory T cell;Runx3;transcriptional control}
}

@ARTICLE{thomas2021tdec969982e13,
  author = {Thomas, H.F.~ and Kotova, E.~ and Jayaram, S.~ and Pilz, A.~ and Romeike, M.~ and Lackner, A.~ and Penz, T.~ and Bock, C.~ and Leeb, M.~ and Halbritter, F.~ and Wysocka, J.~ and Buecker, C.~},
  title = {Temporal Dissection of an Enhancer Cluster Reveals Distinct Temporal and Functional Contributions of Individual Elements.},
  journal = {Molecular Cell},
  year = {2021},
  volume = {81},
  number = {5},
  pages = {969--982.e13},
  issn = {1097-4164 1097-2765},
  doi = {10.1016/j.molcel.2020.12.047},
  keywords = {Animals;Mice;Cell Line;Transcription;Genetic;Signal Transduction;Sequence Analysis;RNA;Exons;Introns;*differentiation;*enhancer;*Enhancer Elements;Genetic;*Gene Expression Regulation;Developmental;*pluripotency;*Promoter Regions;Genetic;*RNA Pol II;*super-enhancer;*transcription;Cell Nucleus/genetics/metabolism;Drosophila melanogaster/genetics/metabolism;Fibroblast Growth Factor 5/*genetics/metabolism;Gene Knockout Techniques;Genes;Reporter;Green Fluorescent Proteins/genetics/metabolism;Histones/genetics/metabolism;Luminescent Proteins/genetics/metabolism;Mouse Embryonic Stem Cells/cytology/*metabolism;RNA Polymerase II/*genetics/metabolism;Single-Cell Analysis}
}

@ARTICLE{agerer2021smmeeabg6461,
  author = {Agerer, B.~ and Koblischke, M.~ and Gudipati, V.~ and Montaño-Gutierrez, L.F.~ and Smyth, M.~ and Popa, A.~ and Genger, J.-W.~ and Endler, L.~ and Florian, D.M.~ and M{\"u}hlgrabner, V.~ and Graninger, M.~ and Aberle, S.W.~ and Husa, A.-M.~ and Shaw, L.E.~ and Lercher, A.~ and Gattinger, P.~ and Torralba-Gombau, R.~ and Trapin, D.~ and Penz, T.~ and Barreca, D.~ and Fae, I.~ and Wenda, S.~ and Traugott, M.~ and Walder, G.~ and Pickl, W.F.~ and Thiel, V.~ and Allerberger, F.~ and Stockinger, H.~ and Puchhammer-St{\"o}ckl, E.~ and Weninger, W.~ and Fischer, G.~ and Hoepler, W.~ and Pawelka, E.~ and Zoufaly, A.~ and Valenta, R.~ and Bock, C.~ and Paster, W.~ and Geyeregger, R.~ and Farlik, M.~ and Halbritter, F.~ and Huppa, J.B.~ and Aberle, J.H.~ and Bergthaler, A.~},
  title = {SARS-CoV-2 Mutations in MHC-I-Restricted Epitopes Evade CD8(+) T Cell Responses.},
  journal = {Science Immunology},
  year = {2021},
  volume = {6},
  number = {57},
  pages = {eabg6461},
  issn = {2470-9468},
  doi = {10.1126/sciimmunol.abg6461},
  keywords = {Humans;Cell Proliferation;High-Throughput Nucleotide Sequencing;*Mutation;CD8-Positive T-Lymphocytes/*immunology/pathology;*COVID-19/genetics/immunology/pathology;*Epitopes;T-Lymphocyte/genetics/immunology;*Immunity;Cellular;*SARS-CoV-2/genetics/immunology;HLA-A Antigens/*immunology;Interferon-gamma/immunology;Peptides/genetics/immunology}
}

@ARTICLE{schick2021abpc269278,
  author = {Schick, S.~ and Grosche, S.~ and Kohl, K.E.~ and Drpic, D.~ and Jaeger, M.G.~ and Marella, N.C.~ and Imrichova, H.~ and Lin, J.-M.G.~ and Hofst{\"a}tter, G.~ and Schuster, M.~ and Rendeiro, A.F.~ and Koren, A.~ and Petronczki, M.~ and Bock, C.~ and M{\"u}ller, A.C.~ and Winter, G.E.~ and Kubicek, S.~},
  title = {Acute BAF Perturbation Causes Immediate Changes in Chromatin Accessibility.},
  journal = {Nature Genetics},
  year = {2021},
  volume = {53},
  number = {3},
  pages = {269--278},
  issn = {1546-1718 1061-4036},
  doi = {10.1038/s41588-021-00777-3}
}

@ARTICLE{rindler2021srad630892,
  author = {Rindler, K.~ and Krausgruber, T.~ and Thaler, F.M.~ and Alkon, N.~ and Bangert, C.~ and Kurz, H.~ and Fortelny, N.~ and Rojahn, T.B.~ and Jonak, C.~ and Griss, J.~ and Bock, C.~ and Brunner, P.M.~},
  title = {Spontaneously Resolved Atopic Dermatitis Shows Melanocyte and Immune Cell Activation Distinct from Healthy Control Skin.},
  journal = {Frontiers in Immunology},
  year = {2021},
  volume = {12},
  pages = {630892},
  issn = {1664-3224},
  doi = {10.3389/fimmu.2021.630892},
  keywords = {atopic dermatitis;eczema;multiplex proteomics;single-cell RNA seq;spontaneous remission}
}

@ARTICLE{valent2021pmh2e536,
  author = {Valent, P.~ and Orfao, A.~ and Kubicek, S.~ and Staber, P.~ and Haferlach, T.~ and Deininger, M.~ and Kollmann, K.~ and Lion, T.~ and Virgolini, I.~ and Winter, G.~ and Hantschel, O.~ and Kenner, L.~ and Zuber, J.~ and Grebien, F.~ and Moriggl, R.~ and Hoermann, G.~ and Hermine, O.~ and Andreeff, M.~ and Bock, C.~ and Mughal, T.~ and Constantinescu, S.N.~ and Kralovics, R.~ and Sexl, V.~ and Skoda, R.~ and Superti-Furga, G.~ and J{\"a}ger, U.~},
  title = {Precision Medicine in Hematology 2021: Definitions, Tools, Perspectives, and Open Questions.},
  journal = {HemaSphere},
  year = {2021},
  volume = {5},
  number = {3},
  pages = {e536},
  issn = {2572-9241},
  doi = {10.1097/HS9.0000000000000536}
}

@ARTICLE{swoboda2021spmm10911105,
  author = {Swoboda, A.~ and Soukup, R.~ and Eckel, O.~ and Kinslechner, K.~ and Wingelhofer, B.~ and Schoerghofer, D.~ and Sternberg, C.~ and Pham, H.T.T.~ and Vallianou, M.~ and Horvath, J.~ and Stoiber, D.~ and Kenner, L.~ and Larue, L.~ and Poli, V.~ and Beermann, F.~ and Yokota, T.~ and Kubicek, S.~ and Krausgruber, T.~ and Rendeiro, A.F.~ and Bock, C.~ and Zenz, R.~ and Kovacic, B.~ and Aberger, F.~ and Hengstschlaeger, M.~ and Petzelbauer, P.~ and Mikula, M.~ and Moriggl, R.~},
  title = {STAT3 Promotes Melanoma Metastasis by CEBP-Induced Repression of the MITF Pathway.},
  journal = {Oncogene},
  year = {2021},
  volume = {40},
  number = {6},
  pages = {1091--1105},
  issn = {0950-9232},
  doi = {10.1038/s41388-020-01584-6}
}

@ARTICLE{reitermaier2021βtcpe20201189,
  author = {Reitermaier, R.~ and Krausgruber, T.~ and Fortelny, N.~ and Ayub, T.~ and Vieyra-Garcia, P.A.~ and Kienzl, P.~ and Wolf, P.~ and Scharrer, A.~ and Fiala, C.~ and K{\"o}lz, M.~ and Hiess, M.~ and Vierhapper, M.~ and Schuster, C.~ and Spittler, A.~ and Worda, C.~ and Weninger, W.~ and Bock, C.~ and Eppel, W.~ and Elbe-B{\"u}rger, A.~},
  title = {αβγδ T Cells Play a Vital Role in Fetal Human Skin Development and Immunity.},
  journal = {Journal of Experimental Medicine},
  year = {2021},
  volume = {218},
  number = {4},
  pages = {e20201189},
  issn = {1540-9538 0022-1007},
  doi = {10.1084/jem.20201189},
  keywords = {Adult;Humans;Middle Aged;Healthy Volunteers;Transcriptome;T-Lymphocytes/*immunology;Cells;Cultured;Cytokines/metabolism;*Immunologic Surveillance;Fetus/*immunology;Intestines/embryology/immunology;Receptors;Antigen;T-Cell;alpha-beta/*genetics;Receptors;Antigen;T-Cell;gamma-delta/*genetics;RNA-Seq/methods;Single-Cell Analysis/methods;Skin/*embryology/growth \& development/*immunology}
}

@ARTICLE{redl2021rdtoe202000794,
  author = {Redl, E.~ and Sheibani-Tezerji, R.~ and Cardona, C.D.J.~ and Hamminger, P.~ and Timelthaler, G.~ and Hassler, M.R.~ and Zrimšek, M.~ and Lagger, S.~ and Dillinger, T.~ and Hofbauer, L.~ and Draganíc, K.~ and Tiefenbacher, A.~ and Kothmayer, M.~ and Dietz, C.H.~ and Ramsahoye, B.H.~ and Kenner, L.~ and Bock, C.~ and Seiser, C.~ and Ellmeier, W.~ and Schweikert, G.~ and Egger, G.~},
  title = {Requirement of DNMT1 to Orchestrate Epigenomic Reprogramming for NPM-ALK-Driven Lymphomagenesis.},
  journal = {Life Science Alliance},
  year = {2021},
  volume = {4},
  number = {2},
  pages = {e202000794},
  doi = {10.26508/LSA.202000794},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85098258475\&doi=10.26508%2fLSA.202000794\&partnerID=40\&md5=e45f4182dd615ee120c28eb69b5630e3}
}

@ARTICLE{bangert2021pmdcabe2749,
  author = {Bangert, C.~ and Rindler, K.~ and Krausgruber, T.~ and Alkon, N.~ and Thaler, F.M.~ and Kurz, H.~ and Ayub, T.~ and Demirtas, D.~ and Fortelny, N.~ and Vorstandlechner, V.~ and Bauer, W.M.~ and Quint, T.~ and Mildner, M.~ and Jonak, C.~ and Elbe-B{\"u}rger, A.~ and Griss, J.~ and Bock, C.~ and Brunner, P.M.~},
  title = {Persistence of Mature Dendritic Cells, TH2A, and Tc2 Cells Characterize Clinically Resolved Atopic Dermatitis under IL-4Rα Blockade.},
  journal = {Science Immunology},
  year = {2021},
  volume = {6},
  number = {55},
  pages = {abe2749},
  issn = {2470-9468},
  doi = {10.1126/sciimmunol.abe2749}
}

@ARTICLE{minnoye2021capm10,
  author = {Minnoye, L.~ and Marinov, G.K.~ and Krausgruber, T.~ and Pan, L.~ and Marand, A.P.~ and Secchia, S.~ and Greenleaf, W.J.~ and Furlong, E.E.M.~ and Zhao, K.~ and Schmitz, R.J.~ and Bock, C.~ and Aerts, S.~},
  title = {Chromatin Accessibility Profiling Methods.},
  journal = {Nature Reviews Methods Primers},
  year = {2021},
  volume = {1},
  pages = {10},
  doi = {10.1038/s43586-020-00008-9},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85104068906\&doi=10.1038%2fs43586-020-00008-9\&partnerID=40\&md5=52d5ff60de8cf819e9c548785def3b38}
}

@ARTICLE{paolino2021rltr442447,
  author = {Paolino, M.~ and Koglgruber, R.~ and Cronin, S.J.F.~ and Uribesalgo, I.~ and Rauscher, E.~ and Harreiter, J.~ and Schuster, M.~ and Bancher-Todesca, D.~ and Pranjic, B.~ and Novatchkova, M.~ and Fededa, J.P.~ and White, A.J.~ and Sigl, V.~ and Dekan, S.~ and Penz, T.~ and Bock, C.~ and Kenner, L.~ and Holl{\"a}nder, G.A.~ and Anderson, G.~ and Kautzky-Willer, A.~ and Penninger, J.M.~},
  title = {RANK Links Thymic Regulatory T Cells to Fetal Loss and Gestational Diabetes in Pregnancy.},
  journal = {Nature},
  year = {2021},
  volume = {589},
  number = {7842},
  pages = {442--447},
  issn = {1476-4687 0028-0836},
  doi = {10.1038/s41586-020-03071-0},
  keywords = {Animals;Female;Humans;Male;Mice;Pregnancy;Cell Proliferation;Mice;Inbred C57BL;Mice;Inbred BALB C;Glucose/metabolism;Adipocytes/pathology;Diabetes;Gestational/etiology/*immunology/metabolism/pathology;Epithelial Cells/immunology;Fetal Death/*etiology;Fetus/immunology/metabolism/pathology;Glucose Intolerance/genetics;Intra-Abdominal Fat/pathology;Placenta/immunology/pathology;Receptor Activator of Nuclear Factor-kappa B/deficiency/genetics/*metabolism;T-Lymphocytes;Regulatory/cytology/*immunology;Thymus Gland/cytology/*immunology;Transcription Factors/metabolism}
}

@ARTICLE{juehling2021tcer157169,
  author = {J{\"u}hling, F.~ and Hamdane, N.~ and Crouchet, E.~ and Li, S.~ and El Saghire, H.~ and Mukherji, A.~ and Fujiwara, N.~ and Oudot, M.A.~ and Thumann, C.~ and Saviano, A.~ and Roca Suarez, A.A.~ and Goto, K.~ and Masia, R.~ and Sojoodi, M.~ and Arora, G.~ and Aikata, H.~ and Ono, A.~ and Tabrizian, P.~ and Schwartz, M.~ and Polyak, S.J.~ and Davidson, I.~ and Schmidl, C.~ and Bock, C.~ and Schuster, C.~ and Chayama, K.~ and Pessaux, P.~ and Tanabe, K.K.~ and Hoshida, Y.~ and Zeisel, M.B.~ and Duong, F.H.~ and Fuchs, B.C.~ and Baumert, T.F.~},
  title = {Targeting Clinical Epigenetic Reprogramming for Chemoprevention of Metabolic and Viral Hepatocellular Carcinoma.},
  journal = {Gut},
  year = {2021},
  volume = {70},
  number = {1},
  pages = {157--169},
  issn = {1468-3288 0017-5749},
  doi = {10.1136/gutjnl-2019-318918},
  keywords = {Animals;Humans;Male;Mice;Disease Models;Animal;Mice;Inbred C57BL;*Epigenesis;Genetic;*chemoprevention;*gene expression;*hepatitis C;*hepatocellular carcinoma;*non-alcoholic steatohepatitis;Carcinoma;Hepatocellular/etiology/*prevention \& control;Hepatitis C;Chronic/*complications/genetics/pathology;Liver Neoplasms/etiology/*prevention \& control;Non-alcoholic Fatty Liver Disease/*complications/genetics/pathology}
}

@ARTICLE{bock2021oca1317,
  author = {Bock, C.~ and Boutros, M.~ and Camp, J.G.~ and Clarke, L.~ and Clevers, H.~ and Knoblich, J.A.~ and Liberali, P.~ and Regev, A.~ and Rios, A.C.~ and Stegle, O.~ and Stunnenberg, H.G.~ and Teichmann, S.A.~ and Treutlein, B.~ and Vries, R.G.J.~ and {the Human Cell Atlas ‘Biological Network’ Organoids}},
  title = {The Organoid Cell Atlas.},
  journal = {Nature Biotechnology},
  year = {2021},
  volume = {39},
  number = {1},
  pages = {13--17},
  issn = {1546-1696 1087-0156},
  doi = {10.1038/s41587-020-00762-x}
}