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Publikationen von Adam Gosztolai

2024

  • Arnaudon A., Schindler D.J., Peach R.L., Gosztolai A., Hodges M., Schaub M.T., Barahona M.
    Algorithm 1044: PyGenStability, a Multiscale Community Detection with Generalized Markov Stability.
    ACM Transactions on Mathematical Software 50(2):15, (2024) [bib]
    
@ARTICLE{arnaudon2024a1pa15,
  author = {Arnaudon, A.~ and Schindler, D.J.~ and Peach, R.L.~ and Gosztolai, A.~ and Hodges, M.~ and Schaub, M.T.~ and Barahona, M.~},
  title = {Algorithm 1044: PyGenStability, a Multiscale Community Detection with Generalized Markov Stability.},
  journal = {ACM Transactions on Mathematical Software},
  year = {2024},
  volume = {50},
  number = {2},
  pages = {15},
  doi = {10.1145/3651225},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85197263586\&doi=10.1145%2f3651225\&partnerID=40\&md5=fd16d2a98da72d4411def4ca90c2f4fa}
}
  • Peach R., Vinao-Carl M., Grossman N., David M., Mallas E., Sharp D.J., Malhotra P.A., Vandergheynst P., Gosztolai A.
    Implicit Gaussian Process Representation of Vector Fields over Arbitrary Latent Manifolds.
    In Proceedings Twelfth International Conference on Learning Representations (ICLR 2024), (2024) [bib]
    
@INPROCEEDINGS{peach2024igpr,
  author = {Peach, R.~ and Vinao-Carl, M.~ and Grossman, N.~ and David, M.~ and Mallas, E.~ and Sharp, D.J.~ and Malhotra, P.A.~ and Vandergheynst, P.~ and Gosztolai, A.~},
  title = {Implicit Gaussian Process Representation of Vector Fields over Arbitrary Latent Manifolds.},
  booktitle = {Proceedings Twelfth International Conference on Learning Representations (ICLR 2024)},
  year = {2024},
  url = {https://openreview.net/forum?id=YEPlTU5mZC}
}

2023

  • Gosztolai A., Peach R.L, Arnaudon A., Barahona M., Vandergheynst P.
    Interpretable Statistical Representations of Neural Population Dynamics and Geometry.
    arXiv 2304.03376, (2024) [bib]
    
@MISC{gosztolai2024isrn230403376,
  author = {Gosztolai, A.~ and Peach, R.L~ and Arnaudon, A.~ and Barahona, M.~ and Vandergheynst, P.~},
  title = {Interpretable Statistical Representations of Neural Population Dynamics and Geometry.},
  year = {2024},
  url = {https://arxiv.org/abs/2304.03376}
}

2022

  • Gosztolai A., Ramdya P.
    Connecting the Dots in Ethology: Applying Network Theory to Understand Neural and Animal Collectives.
    Current Opinion in Neurobiology 73:102532, (2022) [bib]
    
@ARTICLE{gosztolai2022cdea102532,
  author = {Gosztolai, A.~ and Ramdya, P.~},
  title = {Connecting the Dots in Ethology: Applying Network Theory to Understand Neural and Animal Collectives.},
  journal = {Current Opinion in Neurobiology},
  year = {2022},
  volume = {73},
  pages = {102532},
  issn = {1873-6882 0959-4388},
  doi = {10.1016/j.conb.2022.102532},
  keywords = {Animals;Network theory;*Ethology/methods;*Neurons/physiology;Behavior;Behavior;Animal;Collective behavior;Connectomics;Controllability;Functional recordings;Geometry;Network topology;Neural circuits;Symmetry;Tracking}
}

2021

  • Gosztolai A., Günel S., Lobato-Ríos V., Pietro Abrate M., Morales D., Rhodin H., Fua P., Ramdya P.
    LiftPose3D, a Deep Learning-Based Approach for Transforming Two-Dimensional to Three-Dimensional Poses in Laboratory Animals.
    Nature Methods 18(8), 975–981, (2021) [bib]
    
@ARTICLE{gosztolai2021ladl975981,
  author = {Gosztolai, A.~ and G{\"u}nel, S.~ and Lobato-Ríos, V.~ and Pietro Abrate, M.~ and Morales, D.~ and Rhodin, H.~ and Fua, P.~ and Ramdya, P.~},
  title = {LiftPose3D, a Deep Learning-Based Approach for Transforming Two-Dimensional to Three-Dimensional Poses in Laboratory Animals.},
  journal = {Nature Methods},
  year = {2021},
  volume = {18},
  number = {8},
  pages = {975--981},
  issn = {1548-7105 1548-7091},
  doi = {10.1038/s41592-021-01226-z},
  keywords = {Animals;Female;*Algorithms;Mice;Rats;Posture/*physiology;Calibration;*Deep Learning;Animals;Laboratory/*physiology;Drosophila melanogaster;Imaging;Three-Dimensional/*methods;Macaca}
}
  • Gosztolai A., Arnaudon A.
    Unfolding the Multiscale Structure of Networks with Dynamical Ollivier-Ricci Curvature.
    Nature Communications 12:4561, (2021) [bib]
    
@ARTICLE{gosztolai2021umsn4561,
  author = {Gosztolai, A.~ and Arnaudon, A.~},
  title = {Unfolding the Multiscale Structure of Networks with Dynamical Ollivier-Ricci Curvature.},
  journal = {Nature Communications},
  year = {2021},
  volume = {12},
  pages = {4561},
  issn = {2041-1723},
  doi = {10.1038/s41467-021-24884-1}
}

2020

  • Gosztolai A., Barahona M.
    Cellular Memory Enhances Bacterial Chemotactic Navigation in Rugged Environments.
    Communications Physics 3:47, (2020) [bib]
    
@ARTICLE{gosztolai2020cmeb47,
  author = {Gosztolai, A.~ and Barahona, M.~},
  title = {Cellular Memory Enhances Bacterial Chemotactic Navigation in Rugged Environments.},
  journal = {Communications Physics},
  year = {2020},
  volume = {3},
  pages = {47},
  doi = {10.1038/s42005-020-0312-8},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85081534501\&doi=10.1038%2fs42005-020-0312-8\&partnerID=40\&md5=c51b2bc9bfdf395513e8176919eb95dd}
}

2019

  • Gosztolai A., Carrillo J.A., Barahona M.
    Collective Search with Finite Perception: Transient Dynamics and Search Efficiency.
    Frontiers in Physics 6:153, (2019) [bib]
    
@ARTICLE{gosztolai2019cswf153,
  author = {Gosztolai, A.~ and Carrillo, J.A.~ and Barahona, M.~},
  title = {Collective Search with Finite Perception: Transient Dynamics and Search Efficiency.},
  journal = {Frontiers in Physics},
  year = {2019},
  volume = {6},
  pages = {153},
  doi = {10.3389/fphy.2018.00153},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85060310187\&doi=10.3389%2ffphy.2018.00153\&partnerID=40\&md5=156b533fa97cdb33a75845e129e1e586}
}

2018

  • Adams G., Gosztolai A., Lucchini E., Sayed A., Malik A., Cooper N.
    Bayesian Analysis of TPO Levels in Immune Thrombocytopenia.
    Blood 132(Suppl 1: Abstracts 60th Annual Meeting of the American Society of Hematology (ASH), San Diego, CA, 1–4 December 2018):1157, (2018) [bib]
    
@ARTICLE{adams2018batl1157,
  author = {Adams, G.~ and Gosztolai, A.~ and Lucchini, E.~ and Sayed, A.~ and Malik, A.~ and Cooper, N.~},
  title = {Bayesian Analysis of TPO Levels in Immune Thrombocytopenia.},
  journal = {Blood},
  year = {2018},
  volume = {132},
  number = {Suppl 1: Abstracts 60th Annual Meeting of the American Society of Hematology (ASH), San Diego, CA, 1–4 December 2018},
  pages = {1157},
  issn = {0006-4971},
  doi = {10.1182/blood-2018-99-113454}
}
  • Gosztolai A.
    Dynamical Adaptation in Biology on Multiple Scales: From Cells to Collectives.
    PhD Thesis. Mathematics, Imperical College London, London, UK, (2018) [bib]
    
@PHDTHESIS{gosztolai2018dabm,
  author = {Gosztolai, A.~},
  title = {Dynamical Adaptation in Biology on Multiple Scales: From Cells to Collectives.},
  school = {Mathematics, Imperical College London},
  year = {2018},
  address = {London, UK},
  type = {PhD Thesis},
  url = {https://library-search.imperial.ac.uk/discovery/fulldisplay?docid=cdi_proquest_journals_2307367281\&context=PC\&vid=44IMP_INST:ICL_VU1\&lang=en\&search_scope=MyInst_and_CI\&adaptor=Primo%20Central\&tab=Everything\&query=any,contains,Gosztolai\&mode=Basic\&offset=0}
}

2017

  • Gosztolai A., Schumacher J., Behrends V., Bundy J.G., Heydenreich F., Bennett M.H., Buck M., Barahona M.
    GlnK Facilitates the Dynamic Regulation of Bacterial Nitrogen Assimilation.
    Biophysical Journal 112(10), 2219–2230, (2017) [bib]
    
@ARTICLE{gosztolai2017gfdr22192230,
  author = {Gosztolai, A.~ and Schumacher, J.~ and Behrends, V.~ and Bundy, J.G.~ and Heydenreich, F.~ and Bennett, M.H.~ and Buck, M.~ and Barahona, M.~},
  title = {GlnK Facilitates the Dynamic Regulation of Bacterial Nitrogen Assimilation.},
  journal = {Biophysical Journal},
  year = {2017},
  volume = {112},
  number = {10},
  pages = {2219--2230},
  issn = {1542-0086 0006-3495},
  doi = {10.1016/j.bpj.2017.04.012},
  keywords = {Algorithms;Models;Biological;Gene Knockout Techniques;Ammonium Compounds/metabolism;Cation Transport Proteins/metabolism;Escherichia coli;Escherichia coli Proteins/genetics/*metabolism;Nitrogen/deficiency/*metabolism;Nucleotidyltransferases/genetics/*metabolism;PII Nitrogen Regulatory Proteins/genetics/*metabolism;Stress;Physiological}
}

2014