Publikationen

@ARTICLE{schreiner2023cmdc39203932,
  author = {Schreiner, W.~ and Karch, R.~ and Cibena, M.~ and Tomasiak, L.~ and Kenn, M.~ and Pfeiler, G.~},
  title = {Clustering Molecular Dynamics Conformations of the CC’-Loop of the PD-1 Immuno-Checkpoint Receptor.},
  journal = {Computational and Structural Biotechnology Journal},
  year = {2023},
  volume = {21},
  pages = {3920--3932},
  doi = {10.1016/j.csbj.2023.07.004}
}

@ARTICLE{kenn2023frec119,
  author = {Kenn, M.~ and Karch, R.~ and Singer, C.F.~ and Dorffner, G.~ and Schreiner, W.~},
  title = {Flexible Risk Evidence Combination Rules in Breast Cancer Precision Therapy.},
  journal = {Journal of Personalized Medicine},
  year = {2023},
  volume = {13},
  number = {1},
  pages = {119},
  issn = {2075-4426},
  doi = {10.3390/jpm13010119},
  keywords = {precision medicine;personalized medicine;data science;breast cancer;mathematical oncology;Dempster-Shafer theory;evidence theory;hormone receptor status;theory of belief functions}
}

@INCOLLECTION{schreiner2022pupl35693573,
  author = {Schreiner, W.~ and Karch, R.~ and Cibena, M.~ and Tomasiak, L.~ and Kenn, M.~ and Pfeiler, G.~},
  title = {The Performance of UMAP Plus Linkage Compared with Daura-Clustering of Molecular Dynamics of the PD-1 Checkpoint Receptor.},
  booktitle = {Proceedings 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Las Vegas, USA \& Changsha, China, 6–8 December 2022},
  publisher = {Institute of Electrical and Electronics Engineers (IEEE)},
  year = {2022},
  editor = {Adjeroh,D.;Long,Q.;Shi,X.;Guo,F.;Hu,X.;Aluru,S.;Narasimhan,G.;Wang,J.;Kang,M.;Mondal,A.M.;Liu,J.},
  pages = {3569--3573},
  address = {Piscataway, NJ},
  month = {dec},
  url = {https://www.doi.org/10.1109/BIBM55620.2022.9995272}
}

@ARTICLE{kenn2022mdis838129,
  author = {Kenn, M.~ and Karch, R.~ and Tomasiak, L.~ and Cibena, M.~ and Pfeiler, G.~ and Koelbl, H.~ and Schreiner, W.~},
  title = {Molecular Dynamics Identifies Semi-Rigid Domains in the PD-1 Checkpoint Receptor Bound to Its Natural Ligand PD-L1.},
  journal = {Frontiers in Bioengineering and Biotechnology},
  year = {2022},
  volume = {10},
  pages = {838129},
  issn = {2296-4185},
  doi = {10.3389/fbioe.2022.838129},
  keywords = {molecular dynamics;oncology;checkpoint inhibitor;cluster analysis;drug design;immune therapy}
}

@ARTICLE{kenn2022dtvc570,
  author = {Kenn, M.~ and Karch, R.~ and Cacsire Castillo-Tong, D.~ and Singer, C.F.~ and Koelbl, H.~ and Schreiner, W.~},
  title = {Decision Theory versus Conventional Statistics for Personalized Therapy of Breast Cancer.},
  journal = {Journal of Personalized Medicine},
  year = {2022},
  volume = {12},
  number = {4},
  pages = {570},
  issn = {2075-4426},
  doi = {10.3390/jpm12040570},
  keywords = {precision medicine;biomarkers;personalized medicine;data science;breast cancer;gene expression;mathematical oncology;receptor status;decision theory}
}

@ARTICLE{pichler2022gnog139151,
  author = {Pichler, K.M.~ and Fischer, A.~ and Alphonsus, J.~ and Chiari, C.~ and Schmidt, S.~ and Kenn, M.~ and Schreiner, W.~ and Weinmann, D.~ and Rothbauer, M.~ and Windhager, R.~ and Gabius, H.-J.~ and Toegel, S.~},
  title = {Galectin Network in Osteoarthritis: Galectin-4 Programs a Pathogenic Signature of Gene and Effector Expression in Human Chondrocytes in Vitro.},
  journal = {Histochemistry and Cell Biology},
  year = {2022},
  volume = {157},
  number = {2},
  pages = {139--151},
  issn = {1432-119X 0948-6143},
  doi = {10.1007/s00418-021-02053-1},
  keywords = {Inflammation;Lectin;NF-κB;3D spheres;Cartilage;Primary cells}
}

@ARTICLE{kenn2021dtpt4233,
  author = {Kenn, M.~ and Cacsire Castillo-Tong, D.~ and Singer, C.F.~ and Karch, R.~ and Cibena, M.~ and Koelbl, H.~ and Schreiner, W.~},
  title = {Decision Theory for Precision Therapy of Breast Cancer.},
  journal = {Scientific Reports},
  year = {2021},
  volume = {11},
  pages = {4233},
  issn = {2045-2322},
  doi = {10.1038/s41598-021-82418-7}
}

@ARTICLE{kenn2020mnrr1363827,
  author = {Kenn, M.~ and Cacsire Castillo-Tong, D.~ and Singer, C.F.~ and Cibena, M.~ and K{\"o}lbl, H.~ and Schreiner, W.~},
  title = {Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers.},
  journal = {BioMed Research International},
  year = {2020},
  volume = {2020},
  pages = {1363827},
  issn = {2314-6141 2314-6133},
  doi = {10.1155/2020/1363827}
}

@ARTICLE{toegel2020gtdms94s94,
  author = {Toegel, S.~ and Pichler, K.M.~ and Weinmann, D.~ and Fiebrich, J.~ and Kenn, M.~ and Schreiner, W.~ and Lass, R.~ and Windhager, R.~ and Gabius, H.-J.~},
  title = {Galectin-4 Triggers Disease Markers in Osteoarthritic Chondrocytes via NF-κB.},
  journal = {Osteoarthritis and Cartilage},
  year = {2020},
  volume = {28},
  number = {Suppl 1: Abstracts 2020 OARSI World Congress on Osteoarthritis Promoting Clinical and Basic Research in Osteoarthritis, Vienna, Austria, 30 April–3 May 2020},
  pages = {S94},
  issn = {1063-4584},
  doi = {10.1016/j.joca.2020.02.144},
  url = {https://www.sciencedirect.com/science/article/pii/S1063458420302119}
}

@ARTICLE{gruber2019oaia1357,
  author = {Gruber, E.S.~ and Oberhuber, G.~ and Birner, P.~ and Schlederer, M.~ and Kenn, M.~ and Schreiner, W.~ and Jomrich, G.~ and Schoppmann, S.F.~ and Gnant, M.~ and Tse, W.~ and Kenner, L.~},
  title = {The Oncogene AF1Q is Associated with WNT and STAT Signaling and Offers a Novel Independent Prognostic Marker in Patients with Resectable Esophageal Cancer.},
  journal = {Cells},
  year = {2019},
  volume = {8},
  number = {11},
  pages = {1357},
  note = {
[Erratum: Gruber E.S., Oberhuber G., Birner P., Schlederer M., Kenn M., Schreiner W., Jomrich G., Schoppmann S.F., Gnant M., Tse W., Kenner L. Erratum: Gruber, E.S.; et al. The Oncogene AF1Q is Associated with WNT and STAT Signaling and Offers a Novel Independent Prognostic Marker in Patients with Resectable Esophageal Cancer. Cells 2019, 8, 1357. Cells 9(12):2724, (2020)]},
  issn = {2073-4409 2073-4409},
  doi = {10.3390/cells8111357},
  keywords = {*prognosis;*AF1Q;*esophageal cancer;*MLLT11;*STAT;*WNT}
}

@ARTICLE{kinslechner2019cagas197s198,
  author = {Kinslechner, K.~ and Kenn, M.~ and Weinmann, D.~ and Walzer, S.M.~ and Windhager, R.~ and Schreiner, W.~ and Gabius, H.-J.~ and Toegel, S.~},
  title = {Combined Activity of Galectin-1,-3, and-8 Drives Functional Disease Markers in Osteoarthritic Chondrocytes via NF-KB.},
  journal = {Osteoarthritis and Cartilage},
  year = {2019},
  volume = {27},
  number = {Suppl 1: Abstracts 2019 OARSI World Congress on Osteoarthritis. Promoting Clinical and Basic Research in Osteoarthritis, Toronto, Canada, 2–5 May 2019},
  pages = {S197--S198},
  issn = {1063-4584},
  doi = {10.1016/j.joca.2019.02.305}
}

@ARTICLE{kenn2018cgep313326,
  author = {Kenn, M.~ and Cacsire Castillo-Tong, D.~ and Singer, C.F.~ and Cibena, M.~ and K{\"o}lbl, H.~ and Schreiner, W.~},
  title = {Co-Expressed Genes Enhance Precision of Receptor Status Identification in Breast Cancer Patients.},
  journal = {Breast Cancer Research and Treatment},
  year = {2018},
  volume = {172},
  number = {2},
  pages = {313--326},
  issn = {1573-7217 0167-6806},
  doi = {10.1007/s10549-018-4920-x},
  keywords = {Female;Humans;Disease-Free Survival;Breast cancer;Biomarkers;Tumor/genetics;Precision Medicine;Gene Expression Regulation;Neoplastic;Data science;Gene expression;Mathematical oncology;Precision medicine;Receptor status;Breast Neoplasms/classification/*genetics/pathology;Estrogen Receptor alpha/*genetics;Receptor;ErbB-2/*genetics;Receptors;Cell Surface;Receptors;Progesterone/*genetics}
}

@ARTICLE{weinmann2018gifd41874205,
  author = {Weinmann, D.~ and Kenn, M.~ and Schmidt, S.~ and Schmidt, K.~ and Walzer, S.M.~ and Kubista, B.~ and Windhager, R.~ and Schreiner, W.~ and Toegel, S.~ and Gabius, H.-J.~},
  title = {Galectin-8 Induces Functional Disease Markers in Human Osteoarthritis and Cooperates with Galectins-1 and -3.},
  journal = {Cellular and Molecular Life Sciences},
  year = {2018},
  volume = {75},
  number = {22},
  pages = {4187--4205},
  issn = {1420-9071 1420-682X},
  doi = {10.1007/s00018-018-2856-2},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Polymorphism;Single Nucleotide;Inflammation;Biomarkers/metabolism;Disease Progression;RNA;Messenger/metabolism;Cells;Cultured;Interleukin;Chondrocytes/metabolism;Gene Expression;Chondrocytes;Galectin 1/metabolism;Galectin 3/metabolism;Galectins/genetics/*metabolism;Lectin;NF-kappa B/metabolism;NF-kappaB;Osteoarthritis/*genetics/metabolism/pathology}
}

@ARTICLE{toegel2018fcgws21s22,
  author = {Toegel, S.~ and Weinmann, D.~ and Kenn, M.~ and Schreiner, W.~ and Walzer, S.~ and Gabius, H.-J.~ and Windhager, R.~},
  title = {Functional Cooperation of Galectin-8 with Galectin-1 and-3 in Triggering Disease Markers of Human Osteoarthritis.},
  journal = {Osteoarthritis and Cartilage},
  year = {2018},
  volume = {26},
  number = {Suppl 1: Abstracts OARSI World Congress on Osteoarthritis: Promoting Clinical and Basic Research in Osteoarthritis, Liverpool, UK, 26–29 April 2018},
  pages = {S21--S22},
  issn = {1063-4584},
  doi = {10.1016/j.joca.2018.02.059},
  url = {https://www.oarsijournal.com/issue/S1063-4584(18)X0004-1}
}

@ARTICLE{kenn2017geii7734177359,
  author = {Kenn, M.~ and Schlangen, K.~ and Cacsire Castillo-Tong, D.~ and Singer, C.F.~ and Cibena, M.~ and Koelbl, H.~ and Schreiner, W.~},
  title = {Gene Expression Information Improves Reliability of Receptor Status in Breast Cancer Patients.},
  journal = {Oncotarget},
  year = {2017},
  volume = {8},
  number = {44},
  pages = {77341--77359},
  issn = {1949-2553 1949-2553},
  doi = {10.18632/oncotarget.20474},
  keywords = {data science;breast cancer;gene expression;mathematical oncology;receptor status}
}

@ARTICLE{kenn2016smcc16001614,
  author = {Kenn, M.~ and Ribarics, R.~ and Ilieva, N.~ and Cibena, M.~ and Karch, R.~ and Schreiner, W.~},
  title = {Spatiotemporal Multistage Consensus Clustering in Molecular Dynamics Studies of Large Proteins.},
  journal = {Molecular BioSystems},
  year = {2016},
  volume = {12},
  number = {5},
  pages = {1600--1614},
  issn = {1742-2051 1742-2051},
  doi = {10.1039/c5mb00879d},
  keywords = {Algorithms;Protein Conformation;*Cluster Analysis;*Molecular Dynamics Simulation;CD8 Antigens/chemistry/metabolism;Major Histocompatibility Complex;Models;Molecular;Multiprotein Complexes/chemistry;Protein Interaction Domains and Motifs;Proteins/*chemistry/metabolism;Receptors;Antigen;T-Cell/chemistry/metabolism}
}

@ARTICLE{ribarics2015gdhd173593,
  author = {Ribarics, R.~ and Kenn, M.~ and Karch, R.~ and Ilieva, N.~ and Schreiner, W.~},
  title = {Geometry Dynamics of α-Helices in Different Class I Major Histocompatibility Complexes.},
  journal = {Journal of Immunology Research},
  year = {2015},
  volume = {2015},
  pages = {173593},
  issn = {2314-7156 2314-8861 2314-7156},
  doi = {10.1155/2015/173593},
  keywords = {Humans;Mutation;Binding Sites;Protein Binding;*Molecular Dynamics Simulation;Protein Interaction Domains and Motifs;HLA-B27 Antigen/*chemistry/immunology;Immunological Synapses/chemistry/immunology;Least-Squares Analysis;Peptides/*chemistry/immunology;Protein Structure;Secondary;Receptors;Antigen;T-Cell/*chemistry/immunology}
}

@ARTICLE{kenn2014fsdb731325,
  author = {Kenn, M.~ and Ribarics, R.~ and Ilieva, N.~ and Schreiner, W.~},
  title = {Finding Semirigid Domains in Biomolecules by Clustering Pair-Distance Variations.},
  journal = {BioMed Research International},
  year = {2014},
  volume = {2014},
  pages = {731325},
  issn = {2314-6141 2314-6133},
  doi = {10.1155/2014/731325},
  keywords = {Algorithms;Models;Theoretical;Gene Expression Profiling;Oligonucleotide Array Sequence Analysis;Pattern Recognition;Automated;Signal Transduction;Molecular Dynamics Simulation;*Fuzzy Logic;*Cluster Analysis;*Computational Biology;Gene Expression Regulation/genetics/*immunology}
}