Publications

@INPROCEEDINGS{pinetz2026eiro10811094,
  author = {Pinetz, T.~ and Hucke, V.~ and Bogunović, H.~},
  title = {Exploiting Intermediate Reconstructions in Optical Coherence Tomography for Test-Time Adaptation of Medical Image Segmentation.},
  booktitle = {Proceedings of the 9th International Conference on Medical Imaging with Deep Learning, MIDL 2026, Chientan, Taipei, Taiwan, 8–10 July 2026},
  year = {2026},
  editor = {Huo,Y.;Gao,M.;Kuo,C.-F.;Jin,Y.;Deng,R.},
  number = {315},
  series = {Proceedings of Machine Learning Research},
  pages = {1081--1094},
  url = {https://raw.githubusercontent.com/mlresearch/v315/main/assets/pinetz26a/pinetz26a.pdf}
}

@ARTICLE{enzendorfer2026idai,
  author = {Enzendorfer, M.L.~ and Reiter, G.S.~ and Bogunović, H.~ and Riedl, S.~ and Mai, J.~ and Schrittwieser, J.~ and Stapf, C.~ and Mares, V.~ and Mihelčič, M.~ and Little, J.-A.~ and Jaki-Mekjavić, P.~ and Barthelmes, D.~ and Hatz, K.~ and Zarranz-Ventura, J.~ and Creuzot-Garcher, C.~ and Hogg, R.~ and Sadeghipour, A.~ and Schmidt-Erfurth, U.~ and {on Behalf of the I-SCREEN Consortium}},
  title = {I-SCREEN: Development of an AI-Based Infrastructure for Community-Wide Screening and Prediction of Progression in Age-Related Macular Degeneration Providing Accessible Shared Care.},
  journal = {Eye (London, England)},
  year = {2026},
  issn = {1476-5454 0950-222X},
  doi = {10.1038/s41433-026-04487-0}
}

@MISC{sanchezfernandez2026cdgb,
  author = {Sanchez-Fernandez, A.~ and Pinetz, T.~ and Zellinger, W.~ and Klambauer, G.~},
  title = {Closing the Domain Gap in Biomedical Imaging by In-Context Control Samples.},
  year = {2026},
  url = {https://arxiv.org/abs/2604.20824}
}

@MISC{pinetz2026eiro,
  author = {Pinetz, T.~ and Hucke, V.~ and Bogunovic, H.~},
  title = {Exploiting Intermediate Reconstructions in Optical Coherence Tomography for Test-Time Adaption of Medical Image Segmentation.},
  year = {2026},
  url = {https://arxiv.org/abs/2603.05041}
}

@ARTICLE{lachinov2026ppdp,
  author = {Lachinov, D.~ and Pinetz, T.~ and Bogunovic, H.~},
  title = {PINN-EM: Physics-Guided Disease Progression Model of Geographic Atrophy.},
  journal = {IEEE Transactions on Bio-Medical Engineering},
  year = {2026},
  issn = {1558-2531 0018-9294},
  doi = {10.1109/TBME.2026.3655164}
}

@INCOLLECTION{fazekas2026ggar3242,
  author = {Fazekas, B.~ and Pinetz, T.~ and Aresta, G.~ and Emre, T.~ and Bogunović, H.~},
  title = {GARD: Gamma-Based Anatomical Restoration and Denoising for Retinal OCT.},
  booktitle = {Ophthalmic Medical Image Analysis. Proceedings 12th International Workshop, OMIA 2025 Held in Conjunction with MICCAI 2025 Daejeon, South Korea, 27 September 2025},
  publisher = {Springer},
  year = {2026},
  editor = {Fang,H.;Wang,M.;Li,H.;Chen,H.;Bogunović,H.;Lee,C.S.},
  number = {16209},
  series = {Lecture Notes in Computer Science},
  pages = {32--42},
  address = {Cham},
  url = {https://doi.org/10.1007/978-3-032-10351-2_4}
}

@MISC{haas2026lfer,
  author = {Haas, M.~ and Grandits, T.~ and Pinetz, T.~ and Beiert, T.~ and Pezzuto, S.~ and Effland, A.~},
  title = {Learned Finite Element-Based Regularization of the Inverse Problem in Electrocardiographic Imaging.},
  year = {2026},
  url = {https://arxiv.org/abs/2602.07466}
}

@ARTICLE{emre2025ssmp,
  author = {Emre, T.~ and Chakravarty, A.~ and Pinetz, T.~ and Lachinov, D.~ and Menten, M.J.~ and Scholl, H.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Sacu, S.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~ and {for the PINNACLE Consortium, for the Alzheimer’s Disease Neuroimaging Initiative (ADNI)}},
  title = {Stochastic Siamese MAE Pretraining for Longitudinal Medical Images.},
  journal = {arXiv:2512.23441},
  year = {2025},
  doi = {10.48550/arXiv.2512.23441}
}

@ARTICLE{jebril2025spqa187467187476,
  author = {Jebril, H.~ and Pinetz, T.~ and Bogunovic, H.~},
  title = {Shape Prior for Quality Assessment in OCTA via Denoising Autoencoders at the Segmentation Level.},
  journal = {IEEE Access},
  year = {2025},
  volume = {13},
  pages = {187467--187476},
  issn = {2169-3536},
  doi = {10.1109/ACCESS.2025.3625745}
}