Publications

2026

• Hutchins N.T., Meziane M., Lu C., Mitalipova M., Fischer D.S., Li P.
  Reconstructing Signaling Histories of Single Cells Via Perturbation Screens and Transfer Learning.
  Nature Methods, (2026) [bib]
  

  
  @ARTICLE{hutchins2026rshs,
    author = {Hutchins, N.T.~ and Meziane, M.~ and Lu, C.~ and Mitalipova, M.~ and Fischer, D.S.~ and Li, P.~},
    title = {Reconstructing Signaling Histories of Single Cells Via Perturbation Screens and Transfer Learning.},
    journal = {Nature Methods},
    year = {2026},
    issn = {1548-7105 1548-7091},
    doi = {10.1038/s41592-026-03213-8}
  }

• Tan S.Z.K., Puig-Barbe A., Goutte-Gattat D., Eastwood C., Aevermann B., Avola A., Balhoff J.P., Bayindir I.U., Belfiore J., Caron A.R., Fischer D.S., George N., Gyori B.M., Haendel M.A., Hoyt C.T., Kir H., Lubiana T., Matentzoglu N., Overton J.A., Peng B., Peters B., Quardokus E.M., Ray P.L., Roncaglia P., Rivera A.D., Stefancsik R., Teh W.K., Toro S., Vasilevsky N., Xu C., Zhang Y., Scheuermann R.H., Mungall C.J., Diehl A.D., Osumi-Sutherland D.
  The Cell Ontology in the Age of Single-Cell Omics.
  Scientific Data 13:946, (2026) [bib]
  

  
  @ARTICLE{tan2026coas946,
    author = {Tan, S.Z.K.~ and Puig-Barbe, A.~ and Goutte-Gattat, D.~ and Eastwood, C.~ and Aevermann, B.~ and Avola, A.~ and Balhoff, J.P.~ and Bayindir, I.U.~ and Belfiore, J.~ and Caron, A.R.~ and Fischer, D.S.~ and George, N.~ and Gyori, B.M.~ and Haendel, M.A.~ and Hoyt, C.T.~ and Kir, H.~ and Lubiana, T.~ and Matentzoglu, N.~ and Overton, J.A.~ and Peng, B.~ and Peters, B.~ and Quardokus, E.M.~ and Ray, P.L.~ and Roncaglia, P.~ and Rivera, A.D.~ and Stefancsik, R.~ and Teh, W.K.~ and Toro, S.~ and Vasilevsky, N.~ and Xu, C.~ and Zhang, Y.~ and Scheuermann, R.H.~ and Mungall, C.J.~ and Diehl, A.D.~ and Osumi-Sutherland, D.~},
    title = {The Cell Ontology in the Age of Single-Cell Omics.},
    journal = {Scientific Data},
    year = {2026},
    volume = {13},
    pages = {946},
    doi = {10.1038/s41597-026-07173-8},
    url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-105043510701\&doi=10.1038%2fs41597-026-07173-8\&partnerID=40\&md5=d5a32923c811b77efb1197dbe937a915}
  }

• Lan T.C.T., Kochersberger A., Raichur R., Szady S., Tran H., Simeonova R., Helmuth A., Minagar A., Orozco Fuentes M.J., Kumar V., Marrero G., Barrera I., Mangiameli S., Shalek A.K., Sabeti P.C., Chen F., Fischer D.S., Garrison J.L., Chung H.
  Aging Disrupts Spatiotemporal Coordination in the Cycling Murine Ovary.
  Nature Aging 6(6), 1244–1266, (2026) [bib]
  

  
  @ARTICLE{lan2026adsc12441266,
    author = {Lan, T.C.T.~ and Kochersberger, A.~ and Raichur, R.~ and Szady, S.~ and Tran, H.~ and Simeonova, R.~ and Helmuth, A.~ and Minagar, A.~ and Orozco Fuentes, M.J.~ and Kumar, V.~ and Marrero, G.~ and Barrera, I.~ and Mangiameli, S.~ and Shalek, A.K.~ and Sabeti, P.C.~ and Chen, F.~ and Fischer, D.S.~ and Garrison, J.L.~ and Chung, H.~},
    title = {Aging Disrupts Spatiotemporal Coordination in the Cycling Murine Ovary.},
    journal = {Nature Aging},
    year = {2026},
    volume = {6},
    number = {6},
    pages = {1244--1266},
    issn = {2662-8465},
    doi = {10.1038/s43587-026-01140-z},
    keywords = {Animals;Female;Mice;*Aging/physiology;*Ovary/physiology/metabolism;Corpus Luteum;Oocytes;Ovarian Follicle/physiology/metabolism;Ovulation;Spatial Transcriptomics}
  }