Publications

@ARTICLE{oghbaie2026ppvi109545,
  author = {Oghbaie, M.~ and Araújo, T.~ and Reiter, G.S.~ and Bogunović, H.~},
  title = {PiPViT: Patch-Based Visual Interpretable Prototypes for Retinal Image Analysis.},
  journal = {Biomedical Signal Processing and Control},
  year = {2026},
  volume = {117},
  pages = {109545},
  doi = {10.1016/j.bspc.2026.109545},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-105027474702\&doi=10.1016%2fj.bspc.2026.109545\&partnerID=40\&md5=3b1c247734a16fe3a90d9b2b423cefa9}
}

@ARTICLE{riedl2026oapi,
  author = {Riedl, S.~ and Mai, J.~ and Enzendorfer, M.L.~ and Nugawela, M.D.~ and Fritsche, L.~ and Prevost, T.~ and Rueckert, D.~ and Menten, M.~ and Scholl, H.~ and Sivaprasad, S.~ and Lotery, A.~ and Bogunovic, H.~ and Sacu, S.~ and Schmidt-Erfurth, U.~},
  title = {OCT-Based AI-Assisted Phenotyping of Intermediate AMD in the Prospective PINNACLE Trial: PINNACLE Study Report 9.},
  journal = {British Journal of Ophthalmology},
  year = {2026},
  doi = {10.1136/bjo-2025-327938}
}

@ARTICLE{enzendorfer2026idai,
  author = {Enzendorfer, M.L.~ and Reiter, G.S.~ and Bogunović, H.~ and Riedl, S.~ and Mai, J.~ and Schrittwieser, J.~ and Stapf, C.~ and Mares, V.~ and Mihelčič, M.~ and Little, J.-A.~ and Jaki-Mekjavić, P.~ and Barthelmes, D.~ and Hatz, K.~ and Zarranz-Ventura, J.~ and Creuzot-Garcher, C.~ and Hogg, R.~ and Sadeghipour, A.~ and Schmidt-Erfurth, U.~},
  title = {I-SCREEN: Development of an AI-Based Infrastructure for Community-Wide Screening and Prediction of Progression in Age-Related Macular Degeneration Providing Accessible Shared Care.},
  journal = {Eye (London, England)},
  year = {2026},
  issn = {1476-5454 0950-222X},
  doi = {10.1038/s41433-026-04487-0}
}

@ARTICLE{schrittwieser2026cfpr3392,
  author = {Schrittwieser, J.~ and Kuchernig, L.~ and Mares, V.~ and Steiner, I.~ and Birner, K.~ and Frommlet, F.~ and Borrelli, E.~ and Bogunović, H.~ and Sacu, S.~ and Reiter, G.S.~},
  title = {Choriocapillaris Flow-Enriched Prediction of Retinal Sensitivity Using OCT-Derived Biomarkers in Intermediate Age-Related Macular Degeneration.},
  journal = {Journal of Clinical Medicine},
  year = {2026},
  volume = {15},
  number = {9},
  pages = {3392},
  issn = {2077-0383},
  doi = {10.3390/jcm15093392},
  keywords = {microperimetry;OCT;retinal sensitivity;artificial intelligence;OCT angiography;choriocapillaris;deep-learning;flow-deficits;intermediate age-related macular degeneration}
}

@ARTICLE{mercuri2026fvlm101190,
  author = {Mercuri, S.~ and Sacu, S.~ and Frank-Publig, S.~ and Schrittwieser, J.~ and Gumpinger, M.~ and Leingang, O.~ and Schmidt-Erfurth, U.~ and Chakravarthy, U.~ and Bogunovic, H.~ and Virgili, G.~ and Reiter, G.S.~},
  title = {Fluid Volumes Longitudinal Modelling to Predict Atrophy and Fibrosis in Neovascular Age-Related Macular Degeneration.},
  journal = {Ophthalmology Science},
  year = {2026},
  pages = {101190},
  issn = {2666-9145},
  doi = {10.1016/j.xops.2026.101190},
  url = {https://www.sciencedirect.com/science/article/pii/S2666914526001284},
  keywords = {fibrosis;age-related macular degeneration;macular neovascularization;visual acuity;atrophy;fluid volumes;subretinal hyper-reflective material}
}

@ARTICLE{kuchernig2026cfda68,
  author = {Kuchernig, L.~ and Reiter, G.S.~ and Schrittwieser, J.~ and Eidenberger, A.~ and Jeremic, N.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Sacu, S.~},
  title = {Choriocapillaris Flow Deficits Are Spatially Linked to Retinal Pigment Epithelium and Photoreceptor Integrity in Geographic Atrophy.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2026},
  volume = {67},
  number = {4},
  pages = {68},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.67.4.68},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Fundus Oculi;Regional Blood Flow/physiology;Fluorescein Angiography/methods;Tomography;Optical Coherence/methods;*Geographic Atrophy/physiopathology/diagnosis;*Retinal Pigment Epithelium/pathology;*Choroid/blood supply;*Photoreceptor Cells;Vertebrate/pathology}
}

@ARTICLE{steiner2026cbhe,
  author = {Steiner, S.~ and Gerendas, B.S.~ and Deak, G.~ and Leingang, O.~ and Whitby, A.~ and Bogunovic, H.~ and Reiter, G.S.~ and Schmidt-Erfurth, U.~},
  title = {Correlation between Human Expert Macular Fluid Height Assessment and Fluid Volume Quantification in Neovascular Age-Related Macular Degeneration.},
  journal = {Scientific Reports},
  year = {2026},
  issn = {2045-2322},
  doi = {10.1038/s41598-026-44982-8},
  keywords = {Optical coherence tomography;Deep learning;Age-related macular degeneration;Artificial intelligence;Intraretinal fluid;Fluid quantification;Pigment epithelial detachment;Subretinal fluid}
}

@MISC{pinetz2026eiro,
  author = {Pinetz, T.~ and Hucke, V.~ and Bogunovic, H.~},
  title = {Exploiting Intermediate Reconstructions in Optical Coherence Tomography for Test-Time Adaption of Medical Image Segmentation.},
  year = {2026},
  url = {https://arxiv.org/abs/2603.05041}
}

@ARTICLE{fazekas2026stcs945959,
  author = {Fazekas, B.~ and Aresta, G.~ and Seeb{\"o}ck, P.~ and Mai, J.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {SD-RetinaNet: Topologically Constrained Semi-Supervised Retinal Lesion and Layer Segmentation in OCT.},
  journal = {IEEE Transactions on Medical Imaging},
  year = {2026},
  volume = {45},
  number = {3},
  pages = {945--959},
  doi = {10.1109/TMI.2025.3615240}
}

@ARTICLE{frankpublig2026aict9466,
  author = {Frank-Publig, S.~ and Buehl, W.~ and Mares, V.~ and Fuchs, P.~ and Coulibaly, L.M.~ and Eidenberger, A.~ and Scheschy, U.~ and Faustmann, G.~ and Gumpinger, M.~ and S{\"u}kei, E.~ and Bogunovic, H.~ and Reiter, G.S.~ and Sacu, S.~ and Schmidt-Erfurth, U.~},
  title = {Artificial Intelligence-Based Characterization of Therapeutic Response in Fluid Types and Volumes Influencing Retinal Function in Neovascular Age-Related Macular Degeneration.},
  journal = {Scientific Reports},
  year = {2026},
  volume = {16},
  pages = {9466},
  issn = {2045-2322},
  doi = {10.1038/s41598-026-40138-w},
  keywords = {Imaging;Optical coherence tomography;Retina;Artificial intelligence;Neovascular age-related macular degeneration;Intraretinal fluid}
}

@ARTICLE{lachinov2026ppdp,
  author = {Lachinov, D.~ and Pinetz, T.~ and Bogunovic, H.~},
  title = {PINN-EM: Physics-Guided Disease Progression Model of Geographic Atrophy.},
  journal = {IEEE Transactions on Bio-Medical Engineering},
  year = {2026},
  issn = {1558-2531 0018-9294},
  doi = {10.1109/TBME.2026.3655164}
}

@ARTICLE{hinterhuber2026btrm100978,
  author = {Hinterhuber, L.~ and Birner, K.~ and Schrittwieser, J.~ and Coulibaly, L.M.~ and Fuchs, P.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Reiter, G.S.~},
  title = {Biomarker-Specific Test-Retest Repeatabilities of Microperimetry in Neovascular Age-Related Macular Degeneration.},
  journal = {Ophthalmology Science},
  year = {2026},
  volume = {6},
  number = {1},
  pages = {100978},
  issn = {2666-9145},
  doi = {10.1016/j.xops.2025.100978},
  keywords = {Microperimetry;Test-retest repeatability;Functional testing;Fundus-controlled perimetry;Neovascular age-related macular degeneration}
}

@INPROCEEDINGS{fecso2026ravr541551,
  author = {Fecso, R.~ and Morano,  J.~ and Bogunovic, H.~ and Schmidt-Erfurth, U. ~},
  title = {RetFiner: A Vision-Language Refinement Scheme for Retinal Foundation Models.},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2025. Proceedings 28th International Conference, Daejeon, South Korea, 23–27 September 2025},
  year = {2026},
  editor = {Gee,J.C.;Alexander,D.C.;Hong,J.;Iglesias,J.E.;Sudre,C.H.;Venkataraman,A.;Golland,P.;Kim,J.H.;Park,J.},
  volume = {Part V},
  number = {15964},
  series = {Lecture Notes in Computer Science},
  pages = {541--551},
  address = {Cham},
  publisher = {Springer},
  doi = {10.1007/978-3-032-04971-1_51}
}

@INCOLLECTION{fazekas2026ggar3242,
  author = {Fazekas, B.~ and Pinetz, T.~ and Aresta, G.~ and Emre, T.~ and Bogunović, H.~},
  title = {GARD: Gamma-Based Anatomical Restoration and Denoising for Retinal OCT.},
  booktitle = {Ophthalmic Medical Image Analysis. Proceedings 12th International Workshop, OMIA 2025 Held in Conjunction with MICCAI 2025 Daejeon, South Korea, 27 September 2025},
  publisher = {Springer},
  year = {2026},
  editor = {Fang,H.;Wang,M.;Li,H.;Chen,H.;Bogunović,H.;Lee,C.S.},
  number = {16209},
  series = {Lecture Notes in Computer Science},
  pages = {32--42},
  address = {Cham},
  url = {https://doi.org/10.1007/978-3-032-10351-2_4}
}

@INCOLLECTION{fang2026pvv,
  author = {Fang, H.~ and Wang, M.~ and Li, H.~ and Chen, H.~ and Bogunovic, H.~ and Lee, C.S.~},
  title = {Preface.},
  booktitle = {Ophthalmic Medical Image Analysis. Proceedings 12th International Workshop, OMIA 2025 Held in Conjunction with MICCAI 2025 Daejeon, South Korea, 27 September 2025},
  publisher = {Springer},
  year = {2026},
  editor = {Fang,H.;Wang,M.;Li,H.;Chen,H.;Bogunović,H.;Lee,C.S.},
  number = {16209},
  series = {Lecture Notes in Computer Science},
  pages = {v},
  address = {Cham},
  url = {https://link.springer.com/book/10.1007/978-3-032-10351-2}
}

@INPROCEEDINGS{suekei2025aordpp 15,
  author = {S{\"u}kei, E.~ and Oghbaie, M.~ and Schmidt-Erfurth, U.~ and Klambauer, G.~ and Bogunovic, H.~},
  title = {Advancing OCT-Based Retinal Disease Classification with XLSTM: A Framework for Variable-Length Volume Processing.},
  booktitle = {Proceedings 2025 IEEE 22nd International Symposium on Biomedical Imaging, Houston, TX, USA, 14-17 April 2025},
  year = {2025},
  pages = {pp. 1-5},
  address = {Piscataway, NJ},
  publisher = {IEEE},
  doi = {10.1109/ISBI60581.2025.10981206}
}

@ARTICLE{emre2025ssmp,
  author = {Emre, T.~ and Chakravarty, A.~ and Pinetz, T.~ and Lachinov, D.~ and Menten, M.J.~ and Scholl, H.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Sacu, S.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~ and {for the PINNACLE Consortium, for the Alzheimer’s Disease Neuroimaging Initiative (ADNI)}},
  title = {Stochastic Siamese MAE Pretraining for Longitudinal Medical Images.},
  journal = {arXiv:2512.23441},
  year = {2025},
  doi = {10.48550/arXiv.2512.23441}
}

@ARTICLE{schweighofer2025btvme879e887,
  author = {Schweighofer, J.~ and Birner, K.~ and Mohamed, H.~ and Schrittwieser, J.~ and Bogunovic, H.~ and Reiter, G.~ and Schmidt-Erfurth, U.~},
  title = {Benchmarking Test-Retest Variability in Microperimetry for Intermediate Age-Related Macular Degeneration Using MP-3 and MAIA.},
  journal = {Canadian Journal of Ophthalmology},
  year = {2025},
  volume = {60},
  number = {6},
  pages = {e879--e887},
  issn = {0008-4182},
  doi = {10.1016/j.jcjo.2025.05.002}
}

@ARTICLE{enzendorfer2025foah54,
  author = {Enzendorfer, M.~ and Mai, J.~ and Riedl, S.~ and Bogunovic, H.~ and Menten, M.~ and Rueckert, D.~ and Fritsche, L.~ and Prevost, A.~ and Sivaprasad, S.~ and Pfau, M.~ and Scholl, H.~ and Lotery, A.~ and Sacu, S.~ and Schmidt-Erfurth, U.~},
  title = {Functional Outcomes across High-Risk OCT-Based Phenotypes in Intermediate Age-Related Macular Degeneration-PINNACLE Study Report 11.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {15},
  pages = {54},
  issn = {0146-0404},
  doi = {10.1167/iovs.66.15.54}
}

@ARTICLE{esengoenuel2025qaoc108955,
  author = {Eseng{\"o}n{\"u}l, M.~ and Araújo, T.F.~ and Jeremic, N.~ and Zarghami, A.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~},
  title = {Quality Assessment of Optical Coherence Tomography Angiography Images with Relative-Distance-Based Patch Distribution Modeling (R-PaDiM).},
  journal = {Computer Methods and Programs in Biomedicine},
  year = {2025},
  volume = {271},
  pages = {108955},
  issn = {1872-7565 0169-2607},
  doi = {10.1016/j.cmpb.2025.108955},
  keywords = {Algorithms;Humans;Deep learning;Retinal Vessels/diagnostic imaging;*Tomography;Optical Coherence/methods;Optical coherence tomography angiography;*Image Processing;Computer-Assisted/methods;*Angiography/methods;Image quality assessment}
}

@ARTICLE{kreminger2025rmst33,
  author = {Kreminger, J.~ and Hollaus, M.~ and Reiter, G.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Sacu, S.~},
  title = {Retinal Morphology in Successfully Treated Macula-Off Retinal Detachment Based on Semiautomated Layer Quantification of High-Resolution Optical Coherence Tomography.},
  journal = {Translational Vision Science \& Technology},
  year = {2025},
  volume = {14},
  number = {11},
  pages = {33},
  issn = {2164-2591},
  doi = {10.1167/tvst.14.11.33}
}

@ARTICLE{jebril2025spqa187467187476,
  author = {Jebril, H.~ and Pinetz, T.~ and Bogunovic, H.~},
  title = {Shape Prior for Quality Assessment in OCTA via Denoising Autoencoders at the Segmentation Level.},
  journal = {IEEE Access},
  year = {2025},
  volume = {13},
  pages = {187467--187476},
  issn = {2169-3536},
  doi = {10.1109/ACCESS.2025.3625745}
}

@ARTICLE{stino2025cprs297305,
  author = {Stino, H.~ and Birner, K.~ and Steiner, I.~ and Hinterhuber, L.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Reiter, G.S.~ and Pollreisz, A.~},
  title = {Correlation of Point-Wise Retinal Sensitivity with Localized Features of Diabetic Macular Edema Using Deep Learning.},
  journal = {Canadian Journal of Ophthalmology},
  year = {2025},
  volume = {60},
  number = {5},
  pages = {297--305},
  issn = {1715-3360 0008-4182},
  doi = {10.1016/j.jcjo.2025.02.013}
}

@ARTICLE{holmes2025uaot27932799,
  author = {Holmes, C.~ and Kazantzis, D.~ and Raza, S.A.~ and Wijesingha, N.~ and Taylor, T.R.~ and Hagag, A.~ and Riedl, S.~ and Mai, J.~ and Rueckert, D.~ and Bogunovic, H.~ and Scholl, H.~ and Schmidt-Erfurth, U.~ and Fritsche, L.~ and Lotery, A.~ and Sivaprasad, S.~},
  title = {Using Adaptive Optics to Assess Hyporeflective Clump Speed and Size in Age-Related Macular Degeneration in the PINNACLE Study. (PINNACLE Study Report 6).},
  journal = {Eye},
  year = {2025},
  volume = {39},
  number = {15},
  pages = {2793--2799},
  doi = {10.1038/s41433-025-03951-7}
}

@ARTICLE{morano2025mfmb576,
  author = {Morano, J.~ and Fazekas, B.~ and S{\"u}kei, E.~ and Fecso, R.~ and Emre, T.~ and Gumpinger, M.~ and Faustmann, G.~ and Oghbaie, M.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Multimodal Foundation Model and Benchmark for Comprehensive Retinal OCT Image Analysis.},
  journal = {NPJ Digital Medicine},
  year = {2025},
  volume = {8},
  pages = {576},
  issn = {2398-6352},
  doi = {10.1038/s41746-025-01852-3}
}

@ARTICLE{fuchs2025iafd32881,
  author = {Fuchs, P.~ and Schmidt-Erfurth, U.~ and Coulibaly, L.M.~ and Bogunovic, H.~ and Leingang, O.~ and Gruber, A.~ and Frommlet, F.~ and Mares, V.~ and Barthelmes, D.~ and Reiter, G.S.~},
  title = {Impact of AI-Quantified Fluid Dynamics on Visual Outcomes over 5 Years in Patients with Treatment-Naïve nAMD from the FRB! Registry.},
  journal = {Scientific Reports},
  year = {2025},
  volume = {15},
  pages = {32881},
  issn = {2045-2322},
  doi = {10.1038/s41598-025-17417-z},
  keywords = {Algorithms;Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Treatment Outcome;*Subretinal Fluid;Tomography;Optical Coherence;*Visual Acuity;Registries;OCT;*Artificial Intelligence;Artificial intelligence;Anti-VEGF;*Macular Degeneration/physiopathology;Fluid dynamics;Fluid fluctuations;Fluid persistence;Hydrodynamics;Neovascular AMD}
}

@ARTICLE{schmidterfurth2025plsd971981,
  author = {Schmidt-Erfurth, U.~ and Mai, J.~ and Reiter, G.S.~ and Riedl, S.~ and Vogl, W.-D.~ and Sadeghipour, A.~ and McKeown, A.~ and Foos, E.~ and Scheibler, L.~ and Bogunovic, H.~},
  title = {Plain Language Summary of Disease Activity and Therapeutic Response to Pegcetacoplan for Geographic Atrophy Identified by Deep Learning-Based Analysis of OCT.},
  journal = {Immunotherapy},
  year = {2025},
  volume = {17},
  number = {14},
  pages = {971--981},
  issn = {1750-743X},
  doi = {10.1080/1750743X.2025.2569302}
}

@ARTICLE{reiter2025dads68,
  author = {Reiter, G.S.~ and Birner, K.~ and Schrittwieser, J.~ and Hinterhuber, L.~ and Steiner, I.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Deep-Learning-Based Analysis of Disease-Specific Structural Biomarkers on Retinal Sensitivity in Neovascular Age-Related Macular Degeneration.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {12},
  pages = {68},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.66.12.68},
  keywords = {Female;Humans;Male;Aged;Prospective Studies;Aged;80 and over;Cross-Sectional Studies;Biomarkers;Visual Acuity/physiology;Fluorescein Angiography;Tomography;Optical Coherence/methods;*Deep Learning;*Visual Fields/physiology;*Retina/physiopathology/diagnostic imaging;*Wet Macular Degeneration/physiopathology/diagnosis;Visual Field Tests/methods}
}

@ARTICLE{holland2025sctv532,
  author = {Holland, R.~ and Taylor, T.R.P.~ and Holmes, C.~ and Riedl, S.~ and Mai, J.~ and Patsiamanidi, M.~ and Mitsopoulou, D.~ and Hager, P.~ and M{\"u}ller, P.~ and Paetzold, J.C.~ and Scholl, H.P.N.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~ and Rueckert, D.~ and Sivaprasad, S.~ and Lotery, A.J.~ and Menten, M.J.~},
  title = {Specialized Curricula for Training Vision Language Models in Retinal Image Analysis.},
  journal = {NPJ Digital Medicine},
  year = {2025},
  volume = {8},
  pages = {532},
  issn = {2398-6352},
  doi = {10.1038/s41746-025-01893-8}
}

@ARTICLE{goldbach2025hegv30414,
  author = {Goldbach, F.~ and Gerendas, B.~ and Leingang, O.~ and Alten, T.~ and Bampoulidis, A.~ and Brugger, J.~ and Bogunovic, H.~ and Sadeghipour, A.~ and Schmidt-Erfurth, U.~},
  title = {Human Expert Grading versus Automated Quantification of Fluid Volumes in nAMD, DME and BRVO.},
  journal = {Scientific Reports},
  year = {2025},
  volume = {15},
  pages = {30414},
  issn = {2045-2322},
  doi = {10.1038/s41598-025-13019-x}
}

@ARTICLE{michl2025carf552560,
  author = {Michl, M.~ and Gerendas, B.S.~ and Gruber, A.~ and Goldbach, F.~ and Mylonas, G.~ and Leingang, O.~ and B{\"u}hl, W.~ and Sacu, S.~ and Bogunovic, H.~ and Sadeghipour, A.~ and Schmidt-Erfurth, U.~},
  title = {Comparison of AI-Based Retinal Fluid Monitoring in Neovascular Age-Related Macular Degeneration with Manual Assessment by Different Eye Care Professionals Under Optimized Conditions.},
  journal = {Acta Ophthalmologica},
  year = {2025},
  volume = {103},
  number = {5},
  pages = {552--560},
  issn = {1755-3768 1755-375X},
  doi = {10.1111/aos.17458},
  keywords = {optical coherence tomography;automated;grading;manual;neovascular age‐related macular degeneration;retinal fluid}
}

@ARTICLE{mai2025delr48,
  author = {Mai, J.~ and Reiter, G.~ and Riedl, S.~ and Vogl, W.~ and Sadeghipour, A.~ and McKeown, A.~ and Foos, E.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Dynamics of the EZ/RPE Loss Ratio on OCT over Time during Geographic Atrophy Progression and Treatment with Pegcetacoplan.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {11},
  pages = {48},
  issn = {0146-0404},
  doi = {10.1167/iovs.66.11.48}
}

@ARTICLE{mares2025afmt75,
  author = {Mares, V.~ and Reiter, G.~ and Feitosa, A.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Nehemy, M.~},
  title = {Automated Fluid Monitoring to Optimize the Follow-up of Neovascular Age-Related Macular Degeneration Patients in the Brazilian Population.},
  journal = {International Journal of Retina and Vitreous},
  year = {2025},
  volume = {11},
  pages = {75},
  issn = {2056-9920},
  doi = {10.1186/s40942-025-00695-0}
}

@ARTICLE{aresta2025raro29722985,
  author = {Aresta, G.~ and Araújo, T.~ and Faustmann, G.~ and Bogunović, H.~},
  title = {ROQUS: A Retinal OCT Quality and Usability Score.},
  journal = {Biomedical Optics Express},
  year = {2025},
  volume = {16},
  number = {7},
  pages = {2972--2985},
  doi = {10.1364/BOE.564188}
}

@ARTICLE{jeremic2025srio27,
  author = {Jeremic, N.~ and Eseng{\"o}n{\"u}l, M.~ and Zarghami, A.~ and Pawloff, M.~ and Hasun, M.~ and Schreiner, M.~ and Windhager, R.~ and Niessner, A.~ and Pollreisz, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Superficial Retinal Intercapillary Oxygen Diffusion and Perfusion Deficit Alterations in Patients with Coronary Artery Disease.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {9},
  pages = {27},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.66.9.27},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Fundus Oculi;Coronary Angiography;Fluorescein Angiography/methods;Tomography;Optical Coherence/methods;*Coronary Artery Disease/physiopathology/metabolism/diagnosis;*Oxygen/metabolism;*Retinal Vessels/physiopathology/diagnostic imaging}
}

@ARTICLE{birner2025npda423431,
  author = {Birner, K.~ and Coulibaly, L.M.~ and Schrittwieser, J.~ and Steiner, I.~ and Mohamed, H.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Reiter, G.S.~},
  title = {Normative Prospective Data on Automatically Quantified Retinal Morphology Correlated to Retinal Function in Healthy Ageing Eyes by Two Microperimetry Devices.},
  journal = {Acta Ophthalmologica},
  year = {2025},
  volume = {103},
  number = {4},
  pages = {423--431},
  issn = {1755-3768 1755-375X},
  doi = {10.1111/aos.17434},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Prospective Studies;Aged;80 and over;Healthy Volunteers;Reference Values;optical coherence tomography;Visual Acuity;artificial intelligence;Nerve Fibers;*Retinal Ganglion Cells;*Tomography;Optical Coherence/methods;Microperimetry;deep‐learning;ellipsoid zone;*Aging/physiology;*Healthy Aging/physiology;*Retina/physiology/diagnostic imaging;*Visual Field Tests/instrumentation/methods;*Visual Fields/physiology}
}

@ARTICLE{fazekas2025earo590,
  author = {Fazekas, B.~ and Frank, S.~ and Reiter, G.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Effect of Axial Resolution in OCT on Automated Deep Learning-Based Retinal Layer Segmentation Performance.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {590},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804481}
}

@ARTICLE{hinterhuber2025dssc3262,
  author = {Hinterhuber, L.~ and Reiter, G.~ and Schrittwieser, J.~ and Birner, K.~ and Gumpinger, M.~ and Weigert, G.~ and Sacu, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Deep-Learning Supported Structure-Function Correlation and Functional Assessment of Pointwise Sensitivity in Retinal Vein Occlusion.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {3262},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2803595\&resultClick=1}
}

@ARTICLE{stino2025idli2400,
  author = {Stino, H.~ and Birner, K.~ and Steiner, I.~ and Hinterhuber, L.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Reiter, G.~ and Pollreisz, A.~},
  title = {Influence of Deep Learning-Quantified Intraretinal Fluid Volume and Ellipsoid Zone Thickness on Point-Wise Retinal Sensitivity in Diabetic Macular Edema.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {2400},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2806355\&resultClick=1}
}

@ARTICLE{chakravarty2025pmli4086,
  author = {Chakravarty, A.~ and Mai, J.~ and Emre, T.~ and Enzendorfer, M.~ and Riedl, S.~ and Scholl, H.~ and Sivaprasad, S.~ and Fritsche, L.~ and Prevost, T.~ and Menten, M.~ and Rueckert, D.~ and Lotery, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Prototypical Machine Learning for Individual Prediction of Conversion to Atrophic AMD in the PINNACLE Study.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {4086},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804321}
}

@ARTICLE{esengoenuel2025raaf4175,
  author = {Eseng{\"o}n{\"u}l, M.~ and Jeremic, N.~ and Zarghami, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Robustness Analysis of Automated FAZ Segmentation Methods for Cardiovascular Risk Prediction.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {4175},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804826}
}

@ARTICLE{frank2025pscb1340,
  author = {Frank, S.~ and Birner, K.~ and Mai, J.~ and Riedl, S.~ and Baratsits, M.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Nugawela, M.~ and Menten, M.~ and Rueckert, D.~ and Fritsche, L.~ and Prevost, T.~ and Sivaprasad, S.~ and Pfau, M.~ and Scholl, H.~ and Lotery, A.~ and Schmidt-Erfurth, U.~},
  title = {Pointwise Structure-Function Correlation between Focal Event-Targeted Microperimetry and the First Sign of Conversion to Advanced AMD in the PINNACLE Study.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {1340},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804687}
}

@ARTICLE{enzendorfer2025foah1334,
  author = {Enzendorfer, M.~ and Mai, J.~ and Riedl, S.~ and Bogunovic, H.~ and Menten, M.~ and Rueckert, D.~ and Fritsche, L.~ and Prevost, A.~ and Sivaprasad, S.~ and Pfau, M.~ and Scholl, H.~ and Lotery, A.~ and Schmidt-Erfurth, U.~},
  title = {Functional Outcomes Across High-Risk OCT-Based Phenotypes in Intermediate Age-Related Macular Degeneration in the Prospective PINNACLE Study.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {1334},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804189}
}

@ARTICLE{schrittwieser2025tfae1745,
  author = {Schrittwieser, J.~ and Birner, K.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Bogunovic, H.~ and Reiter, G.~ and Schmidt-Erfurth, U.~},
  title = {Topographic and Functional Assessment of Ellipsoid Zone Quantification in Intermediate and Atrophic Age-Related Macular Degeneration and Age-Matched Controls.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {1745},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804170}
}

@ARTICLE{menten2025svmc863,
  author = {Menten, M.~ and Holland, R.~ and Taylor, T.~ and Holmes, C.~ and Riedl, S.~ and Mai, J.~ and Patsiamanidi, M.~ and Mitsopoulou, D.~ and Hager, P.~ and M{\"u}ller, P.~ and Paetzold, J.~ and Scholl, H.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and R{\"u}ckert, D.~ and Sivaprasad, S.~ and Lotery, A.~},
  title = {Specializing Vision-Language Models for the Clinical Management of Age-Related Macular Degeneration.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {863},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2803459}
}

@ARTICLE{bogunovic2025tamf866,
  author = {Bogunovic, H.~ and Morano, J.~ and Fazekas, B.~ and Suekei, E.~ and Fecso, R.~ and Emre, T.~ and Gumpinger, M.~ and Faustmann, G.~ and Schmidt-Erfurth, U.~},
  title = {Towards a Multimodal Foundation Model for Optical Coherence Tomography Classification and Segmentation.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {866},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2803964\&resultClick=1}
}

@ARTICLE{suekei2025arod4088,
  author = {S{\"u}kei, E.~ and Oghbaie, M.~ and Jeremic, N.~ and Klambauer, G.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Advancing Retinal OCT-Based Disease Classification Using a Novel xLSTM-Based Framework for Variable B-Scan Volume Analysis.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {4088},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2804579\&resultClick=1}
}

@ARTICLE{schweighofer2025btvm,
  author = {Schweighofer, J.~ and Birner, K.~ and Mohamed, H.~ and Schrittwieser, J.~ and Bogunovic, H.~ and Reiter, G.S.~ and Schmidt-Erfurth, U.~},
  title = {Benchmarking Test-Retest Variability in Microperimetry for Intermediate Age-Related Macular Degeneration Using MP-3 and MAIA.},
  journal = {Canadian Journal of Ophthalmology},
  year = {2025},
  issn = {1715-3360 0008-4182},
  doi = {10.1016/j.jcjo.2025.05.002}
}

@ARTICLE{mares2025crfp295303,
  author = {Mares, V.~ and Reiter, G.S.~ and Gumpinger, M.~ and Leigang, O.~ and Bogunovic, H.~ and Barthelmes, D.~ and Nehemy, M.B.~ and Schmidt-Erfurth, U.~},
  title = {Correlation of Retinal Fluid and Photoreceptor and RPE Loss in Neovascular AMD by Automated Quantification, a Real-World FRB! Analysis.},
  journal = {Acta Ophthalmologica},
  year = {2025},
  volume = {103},
  number = {3},
  pages = {295--303},
  issn = {1755-3768 1755-375X},
  doi = {10.1111/aos.16799},
  keywords = {retina;optical coherence tomography;geographic atrophy;image analysis;artificial intelligence;machine learning;anti‐VEGF;neovascular AMD;photoreceptor}
}

@ARTICLE{reiter2025anmc421430,
  author = {Reiter, G.S.~ and Lachinov, D.~ and B{\"u}hl, W.~ and Weigert, G.~ and Grechenig, C.~ and Mai, J.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~},
  title = {A Novel Management Challenge in Age-Related Macular Degeneration: Artificial Intelligence and Expert Prediction of Geographic Atrophy.},
  journal = {Ophthalmology Retina},
  year = {2025},
  volume = {9},
  number = {5},
  pages = {421--430},
  issn = {2468-6530},
  doi = {10.1016/j.oret.2024.10.029}
}

@ARTICLE{fazekas2025srlr108586,
  author = {Fazekas, B.~ and Aresta, G.~ and Lachinov, D.~ and Riedl, S.~ and Mai, J.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {SD-LayerNet: Robust and Label-Efficient Retinal Layer Segmentation via Anatomical Priors.},
  journal = {Computer Methods and Programs in Biomedicine},
  year = {2025},
  volume = {261},
  pages = {108586},
  doi = {10.1016/j.cmpb.2025.108586}
}

@ARTICLE{hagag2025fild12111216,
  author = {Hagag, A.M.~ and Holmes, C.~ and Raza, A.~ and Riedl, S.~ and Anders, P.~ and Kaye, R.~ and Prevost, T.~ and Fritsche, L.G.~ and Rueckert, D.~ and Bogunovic, H.~ and Scholl, H.P.N.~ and Schmidt-Erfurth, U.~ and Lotery, A.J.~ and Sivaprasad, S.~},
  title = {Features of Intermediate and Late Dry Age-Related Macular Degeneration on Adaptive Optics Ophthalmoscopy: Pinnacle Study Report 8.},
  journal = {Eye},
  year = {2025},
  volume = {39},
  number = {6},
  pages = {1211--1216},
  note = {
[Erratum: Hagag A.M., Holmes C., Raza A., Riedl S., Anders P., Kaye R., Prevost T., Fritsche L.G., Rueckert D., Bogunovic H., Scholl H.P.N., Schmidt-Erfurth U., Lotery A.J., Sivaprasad S. Correction: Features of Intermediate and Late Dry Age-Related Macular Degeneration on Adaptive Optics Ophthalmoscopy: Pinnacle Study Report 8. Eye 39(5), 1020, (2025)]},
  doi = {10.1038/s41433-025-03607-6}
}

@ARTICLE{frankpublig2025qorb65,
  author = {Frank-Publig, S.~ and Bogunovic, H.~ and Birner, K.~ and Gumpinger, M.~ and Fuchs, P.~ and Coulibaly, L.M.~ and Mares, V.~ and Michel, F.~ and Schmidt, F.S.~ and Schmidt-Erfurth, U.~ and Reiter, G.S.~},
  title = {Quantifications of Outer Retinal Bands in Geographic Atrophy by Comparing Superior Axial Resolution and Conventional OCT.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {4},
  pages = {65},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.66.4.65},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Visual Acuity;*Geographic Atrophy/diagnosis;*Tomography;Optical Coherence/methods/instrumentation}
}

@ARTICLE{birner2025scdq26,
  author = {Birner, K.~ and Reiter, G.S.~ and Steiner, I.~ and Zarghami, A.~ and Sadeghipour, A.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Structure-Function Correlation of Deep-Learning Quantified Ellipsoid Zone and Retinal Pigment Epithelium Loss and Microperimetry in Geographic Atrophy.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {3},
  pages = {26},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.66.3.26},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Prospective Studies;Aged;80 and over;Visual Fields/physiology;*Deep Learning;*Tomography;Optical Coherence/methods;*Visual Field Tests/methods;*Geographic Atrophy/physiopathology/diagnosis;*Retinal Pigment Epithelium/pathology/physiopathology;*Visual Acuity/physiology}
}

@ARTICLE{aresta2025adro26,
  author = {Aresta, G.~ and Araújo, T.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Anomaly Detection in Retinal OCT Images With Deep Learning-Based Knowledge Distillation.},
  journal = {Translational Vision Science \& Technology},
  year = {2025},
  volume = {14},
  number = {3},
  pages = {26},
  issn = {2164-2591},
  doi = {10.1167/tvst.14.3.26},
  keywords = {Humans;*Tomography;Optical Coherence;*Deep Learning;*Image Processing;Computer-Assisted/methods;*Macula Lutea/diagnostic imaging;*Retinal Diseases/diagnostic imaging;*Unsupervised Machine Learning}
}

@ARTICLE{coulibaly2025rmar347359,
  author = {Coulibaly, L.M.~ and Birner, K.~ and Zarghami, A.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Fuchs, P.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~ and Reiter, G.S.~},
  title = {Repeatability of Microperimetry in Areas of Retinal Pigment Epithelium and Photoreceptor Loss in Geographic Atrophy Supported by AI-Based Optical Coherence Tomography Biomarker Quantification.},
  journal = {American Journal of Ophthalmology},
  year = {2025},
  volume = {271},
  pages = {347--359},
  issn = {1879-1891 0002-9394},
  doi = {10.1016/j.ajo.2024.11.005},
  keywords = {Geographic atrophy;AMD;Automated OCT-Biomarker quantification;Fundus controlled perimetry;Microperimetry;Photoreceptor integrity;Test-retest repeatability}
}

@ARTICLE{prenner2025avor4249,
  author = {Prenner, V.~ and Reiter, G.~ and Fuchs, P.~ and Birner, K.~ and Frank, S.~ and Coulibaly, L.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Advancing the Visibility of Outer Retinal Integrity in Neovascular Age-Related Macular Degeneration with High-Resolution OCT.},
  journal = {Canadian Journal of Ophthalmology},
  year = {2025},
  volume = {60},
  number = {1},
  pages = {42--49},
  issn = {0008-4182},
  doi = {10.1016/j.jcjo.2024.05.014}
}

@ARTICLE{futterknecht2025tmgf6,
  author = {Futterknecht, S.~ and Anders, P.~ and Mai, J.~ and Riedl, S.~ and Hall, U.~ and Gabrani, C.~ and Pfau, K.~ and Menten, M.~ and Rueckert, D.~ and Prevost, A.~ and Bogunovic, H.~ and Fritsche, L.~ and Schmidt-Erfurth, U.~ and Sivaprasad, S.~ and Lotery, A.~ and Scholl, H.~ and Pfau, M.~},
  title = {Targeted Microperimetry Grids for Focal Lesions in Intermediate AMD: PINNACLE Study Report 7.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {2},
  pages = {6},
  issn = {0146-0404},
  doi = {10.1167/iovs.66.2.6}
}

@ARTICLE{schmidterfurth2025datr181193,
  author = {Schmidt-Erfurth, U.~ and Mai, J.~ and Reiter, G.S.~ and Riedl, S.~ and Vogl, W.-D.~ and Sadeghipour, A.~ and McKeown, A.~ and Foos, E.~ and Scheibler, L.~ and Bogunovic, H.~},
  title = {Disease Activity and Therapeutic Response to Pegcetacoplan for Geographic Atrophy Identified by Deep Learning-Based Analysis of OCT.},
  journal = {Ophthalmology},
  year = {2025},
  volume = {132},
  number = {2},
  pages = {181--193},
  issn = {1549-4713 0161-6420},
  doi = {10.1016/j.ophtha.2024.08.017}
}

@INCOLLECTION{unterdechler2025caoa94103,
  author = {Unterdechler, M.~ and Fazekas, B.~ and Aresta, G.~ and Bogunović, H.~},
  title = {Comparative Analysis of Data Augmentation for Retinal OCT Biomarker Segmentation.},
  booktitle = {Ophthalmic Medical Image Analysis. Proceedings 11th International Workshop OMIA 2024, held in conjuction with MICCAI 2024, Marrakesh, Morocco, 10 October 2024},
  publisher = {Springer},
  year = {2025},
  editor = {Bhavna,A.;Chen,H.;Hang,H.;Fu,H.;Lee,C.S.},
  number = {15188},
  series = {Lecture Notes in Computer Science},
  pages = {94--103},
  address = {Cham},
  url = {https://doi.org/10.1007/978-3-031-73119-8_10}
}

@ARTICLE{jeremic2025pmca4090,
  author = {Jeremic, N.~ and S{\"u}kei, E.~ and Eseng{\"o}n{\"u}l, M.~ and Zarghami, A.~ and Pawloff, M.~ and Niessner, A.~ and Hasun, M.~ and Weidinger, F.~ and Pollreisz, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Predictive Modeling of Coronary Artery Disease using Ultra-Widefield Color Fundus Photography.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2025},
  volume = {66},
  number = {8: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Salt Lake City, UT, 4-8 May 2025},
  pages = {4090},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2803816}
}

@ARTICLE{morano2024rrrn124970,
  author = {Morano, J.~ and Aresta, G.~ and Bogunović, H.~},
  title = {RRWNet: Recursive Refinement Network for Effective Retinal Artery/Vein Segmentation and Classification.},
  journal = {Expert Systems with Applications},
  year = {2024},
  volume = {256},
  pages = {124970},
  doi = {10.1016/j.eswa.2024.124970},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85200816080\&doi=10.1016%2fj.eswa.2024.124970\&partnerID=40\&md5=401e95eb96c0efd6d4a4c2dc9f048328}
}

@ARTICLE{oghbaie2024vftc102452,
  author = {Oghbaie, M.~ and Araújo, T.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {VLFATRollout: Fully Transformer-Based Classifier for Retinal OCT Volumes.},
  journal = {Computerized Medical Imaging and Graphics},
  year = {2024},
  volume = {118},
  pages = {102452},
  issn = {1879-0771 0895-6111},
  doi = {10.1016/j.compmedimag.2024.102452},
  keywords = {Optical coherence tomography;3D volume classification;Explainability;Transformers}
}

@ARTICLE{birner2024tqcs28165,
  author = {Birner, K.~ and Reiter, G.S.~ and Steiner, I.~ and Deák, G.~ and Mohamed, H.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~},
  title = {Topographic and Quantitative Correlation of Structure and Function Using Deep Learning in Subclinical Biomarkers of Intermediate Age-Related Macular Degeneration.},
  journal = {Scientific Reports},
  year = {2024},
  volume = {14},
  pages = {28165},
  issn = {2045-2322},
  doi = {10.1038/s41598-024-72522-9},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Visual Field Tests;*Biomarkers;*Deep Learning;*Tomography;Optical Coherence/methods;*Macular Degeneration/pathology/diagnostic imaging/physiopathology;Retinal Drusen/diagnostic imaging/physiopathology/pathology}
}

@ARTICLE{suekei2024mrlr26802,
  author = {S{\"u}kei, E.~ and Rumetshofer, E.~ and Schmidinger, N.~ and Mayr, A.~ and Schmidt-Erfurth, U.~ and Klambauer, G.~ and Bogunović, H.~},
  title = {Multi-Modal Representation Learning in Retinal Imaging Using Self-Supervised Learning for Enhanced Clinical Predictions.},
  journal = {Scientific Reports},
  year = {2024},
  volume = {14},
  pages = {26802},
  issn = {2045-2322},
  doi = {10.1038/s41598-024-78515-y},
  keywords = {Humans;Fundus Oculi;Image Processing;Computer-Assisted/methods;Artificial Intelligence;*Tomography;Optical Coherence/methods;*Retina/diagnostic imaging;*Supervised Machine Learning;Contrastive pre-training;Multi-modal imaging;Multimodal Imaging/methods;Predictive modeling;Representation learning;Retinal imaging}
}

@INCOLLECTION{emre2024ltef196206,
  author = {Emre, T.~ and Chakravarty, A.~ and Lachinov, D.~ and Rivail, A.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Learning Temporally Equivariance for Degenerative Disease Progression in OCT by Predicting Future Representations.},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2024. 27th International Conference, Marrakesh, Morocco, 6–10 October 2024, Proceedings, Part XII},
  publisher = {Springer},
  year = {2024},
  editor = {Linguraru,M.G.;Dou,Q.;Feragen,A.;Giannarou,S.;Glocker,B.;Lekadir,K.;Schnabel,J.A.},
  number = {15012},
  series = {Lecture Notes in Computer Science},
  pages = {196--206},
  address = {Cham},
  month = {oct},
  url = {https://doi.org/10.1007/978-3-031-72390-2_19}
}

@ARTICLE{stino2024iobm23342,
  author = {Stino, H.~ and Birner, K.~ and Hinterhuber, L.~ and Struppe, A.~ and Gumpinger, M.~ and Sch{\"u}rer-Waldheim, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Pollreisz, A.~ and Reiter, G.S.~},
  title = {Influence of OCT Biomarkers on Microperimetry Intra- and Interdevice Repeatability in Diabetic Macular Edema.},
  journal = {Scientific Reports},
  year = {2024},
  volume = {14},
  pages = {23342},
  issn = {2045-2322},
  doi = {10.1038/s41598-024-74230-w},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Reproducibility of Results;*Biomarkers;*Tomography;Optical Coherence/methods;*Diabetic Retinopathy/physiopathology/diagnosis;*Macular Edema/physiopathology/diagnosis;*Visual Field Tests/methods}
}

@INCOLLECTION{chakravarty2024fdpw273283,
  author = {Chakravarty, A.~ and Emre, T.~ and Lachinov, D.~ and Rivail, A.~ and Scholl, H.~ and Fritsche, L.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Forecasting Disease Progression with Parallel Hyperplanes in Longitudinal Retinal OCT.},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2024. 27th International Conference, Marrakesh, Morocco, 6–10 October 2024, Proceedings, Part V},
  publisher = {Springer},
  year = {2024},
  editor = {Linguraru,M.G.;Dou,Q.;Feragen,A.;Giannarou,S.;Glocker,B.;Lekadir,K.;Schnabel,J.A.},
  number = {15005},
  series = {Lecture Notes in Computer Science},
  pages = {273--283},
  address = {Cham},
  doi = {10.1007/978-3-031-72086-4_26},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85206571158\&doi=10.1007%2f978-3-031-72086-4_26\&partnerID=40\&md5=779eb79b2e5c5c1820ca5fd47d7a1b67}
}

@INCOLLECTION{shen2024srlf656666,
  author = {Shen, C.~ and Menten, M.J.~ and Bogunović, H.~ and Schmidt-Erfurth, U.~ and Scholl, H.P.N.~ and Sivaprasad, S.~ and Lotery, A.~ and Rueckert, D.~ and Hager, P.~ and Holland, R.~},
  title = {Spatiotemporal Representation Learning for Short and Long Medical Image Time Series.},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2024},
  publisher = {Springer},
  year = {2024},
  editor = {Linguraru,M.G.;Dou,Q.;Feragen,A.;Giannarou,S.;Glocker,B.;Lekadir,K.;Schnabel,J.A.},
  number = {15011},
  series = {Lecture Notes in Computer Science},
  pages = {656--666},
  address = {Cham},
  month = {oct},
  url = {https://doi.org/10.1007/978-3-031-72120-5_61}
}

@ARTICLE{reiter2024lefv350357,
  author = {Reiter, G.~ and Mares, V.~ and Leingang, O.~ and Fuchs, P.~ and Bogunovic, H.~ and Barthelmes, D.~ and Schmidt-Erfurth, U.~},
  title = {Long-Term Effect of Fluid Volumes during the Maintenance Phase in Neovascular Age-Related Macular Degeneration: Results from Fight Retinal Blindness!},
  journal = {Canadian Journal of Ophthalmology},
  year = {2024},
  volume = {59},
  number = {5},
  pages = {350--357},
  issn = {0008-4182},
  doi = {10.1016/j.jcjo.2023.10.017}
}

@ARTICLE{jeremic2024ssca15,
  author = {Jeremic, N.~ and Pawloff, M.~ and Lachinov, D.~ and Rokitansky, S.~ and Hasun, M.~ and Weidinger, F.~ and Pollreisz, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Severity Stratification of Coronary Artery Disease Using Novel Inner Ellipse-Based Foveal Avascular Zone Biomarkers.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {12},
  pages = {15},
  doi = {10.1167/iovs.65.12.15}
}

@ARTICLE{reiter2024acmg101305,
  author = {Reiter, G.S.~ and Mai, J.~ and Riedl, S.~ and Birner, K.~ and Frank, S.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {AI in the Clinical Management of GA: A Novel Therapeutic Universe Requires Novel Tools.},
  journal = {Progress in Retinal and Eye Research},
  year = {2024},
  volume = {103},
  pages = {101305},
  issn = {1873-1635 1350-9462},
  doi = {10.1016/j.preteyeres.2024.101305}
}

@ARTICLE{mai2024qcao20531,
  author = {Mai, J.~ and Reiter, G.S.~ and Riedl, S.~ and Vogl, W.-D.~ and Sadeghipour, A.~ and Foos, E.~ and McKeown, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Quantitative Comparison of Automated OCT and Conventional FAF-Based Geographic Atrophy Measurements in the Phase 3 OAKS/DERBY Trials.},
  journal = {Scientific Reports},
  year = {2024},
  volume = {14},
  pages = {20531},
  issn = {2045-2322},
  doi = {10.1038/s41598-024-71496-y},
  keywords = {Female;Humans;Male;Aged;Aged;80 and over;Disease Progression;Optical coherence tomography;Fluorescein Angiography/methods;Deep learning;Artificial intelligence;*Tomography;Optical Coherence/methods;*Retinal Pigment Epithelium/pathology/diagnostic imaging;*Geographic Atrophy/diagnostic imaging/drug therapy;Fundus autofluorescence;Geographic atrophy;Immunoglobulin Fab Fragments;Macular Degeneration/drug therapy/diagnostic imaging/pathology}
}

@ARTICLE{rivail2024p3is50255040,
  author = {Rivail, A.~ and Araújo, T.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Pretraining of 3D Image Segmentation Models for Retinal OCT Using Denoising-Based Self-Supervised Learning.},
  journal = {Biomedical Optics Express},
  year = {2024},
  volume = {15},
  number = {9},
  pages = {5025--5040},
  issn = {2156-7085},
  doi = {10.1364/BOE.524603}
}

@ARTICLE{chakravarty2024mswl32243239,
  author = {Chakravarty, A.~ and Emre, T.~ and Leingang, O.~ and Riedl, S.~ and Mai, J.~ and Scholl, H.P.N.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Morph-SSL: Self-Supervision with Longitudinal Morphing for Forecasting AMD Progression from OCT Volumes.},
  journal = {IEEE Transactions on Medical Imaging},
  year = {2024},
  volume = {43},
  number = {9},
  pages = {3224--3239},
  doi = {10.1109/TMI.2024.3390940}
}

@ARTICLE{emre20243tnl32003210,
  author = {Emre, T.~ and Chakravarty, A.~ and Rivail, A.~ and Lachinov, D.~ and Leingang, O.~ and Riedl, S.~ and Mai, J.~ and Scholl, H.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~ and {for the PINNACLE Consortium}},
  title = {3DTINC: Time-Equivariant Non-Contrastive Learning for Predicting Disease Progression from Longitudinal OCTs.},
  journal = {IEEE Transactions on Medical Imaging},
  year = {2024},
  volume = {43},
  number = {9},
  pages = {3200--3210},
  issn = {0278-0062},
  doi = {10.1109/TMI.2024.3391215}
}

@INPROCEEDINGS{suekei2024icpw,
  author = {S{\"u}kei, E.~ and Rumetshofer, E.~ and Schmidinger, N.~ and Mayr, A.~ and Schmidt-Erfurth, U.~ and Klambauer, G.~ and Bogunović, H.~},
  title = {Improving Clinical Predictions with Multi-Modal Pre-Training in Retinal Imaging.},
  booktitle = {Proceedings IEEE International Symposium on Biomedical Imaging (ISBI 2024), Athens, Greece, 27–30 May 2024},
  year = {2024},
  address = {Piscataway, NJ},
  publisher = {IEEE},
  doi = {10.1109/ISBI56570.2024.10635447},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85203401337\&doi=10.1109%2fISBI56570.2024.10635447\&partnerID=40\&md5=d998079f3abb9b54ab1e1d79459b7387}
}

@ARTICLE{schranz2024ldaw19278,
  author = {Schranz, M.~ and Bogunovic, H.~ and Deak, G.~ and Sadeghipour, A.~ and Reiter, G.S.~ and Schmidt-Erfurth, U.~},
  title = {Linking Disease Activity with Optical Coherence Tomography Angiography in Neovascular Age Related Macular Degeneration Using Artificial Intelligence.},
  journal = {Scientific Reports},
  year = {2024},
  volume = {14},
  pages = {19278},
  issn = {2045-2322},
  doi = {10.1038/s41598-024-70234-8},
  keywords = {Female;Humans;Male;Aged;Aged;80 and over;Angiogenesis Inhibitors/therapeutic use;Fluorescein Angiography/methods;Artificial Intelligence;Deep learning;Age-related macular degeneration;*Tomography;Optical Coherence/methods;Choroidal Neovascularization/diagnostic imaging/pathology;Deep Learning;Macular Degeneration/diagnostic imaging/pathology;Macular neovascular membrane;Optical coherence tomography angiography;Retinal fluid;Vascular Endothelial Growth Factor A/metabolism;Wet Macular Degeneration/diagnostic imaging/drug therapy}
}

@ARTICLE{holland2024mclr103296,
  author = {Holland, R.~ and Leingang, O.~ and Bogunović, H.~ and Riedl, S.~ and Fritsche, L.~ and Prevost, T.~ and Scholl, H.P.N.~ and Schmidt-Erfurth, U.~ and Sivaprasad, S.~ and Lotery, A.J.~ and Rueckert, D.~ and Menten, M.J.~},
  title = {Metadata-Enhanced Contrastive Learning from Retinal Optical Coherence Tomography Images.},
  journal = {Medical Image Analysis},
  year = {2024},
  volume = {97},
  pages = {103296},
  issn = {1361-8423 1361-8415},
  doi = {10.1016/j.media.2024.103296},
  keywords = {Contrastive learning;Longitudinal data;Medical metadata;Retinal OCT;Self-supervised learning}
}

@ARTICLE{hajnajeeb2024acae5365,
  author = {Haj Najeeb, B.~ and Gerendas, B.S.~ and Deak, G.G.~ and Leingang, O.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {An Automated Comparative Analysis of the Exudative Biomarkers in Neovascular Age-Related Macular Degeneration, The RAP Study: Report 6.},
  journal = {American Journal of Ophthalmology},
  year = {2024},
  volume = {264},
  pages = {53--65},
  doi = {10.1016/j.ajo.2024.02.018},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85190303828\&doi=10.1016%2fj.ajo.2024.02.018\&partnerID=40\&md5=b488b0122d623eef5f0f2138f6040d50}
}

@ARTICLE{frank2024aprp13511359,
  author = {Frank, S.~ and Reiter, G.S.~ and Leingang, O.~ and Fuchs, P.~ and Coulibaly, L.M.~ and Mares, V.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Advances in Photoreceptor and Retinal Pigment Epithelium Quantifications in Intermediate Age-Related Macular Degeneration: High-Res versus Standard Spectralis Optical Coherence Tomography.},
  journal = {Retina},
  year = {2024},
  volume = {44},
  number = {8},
  pages = {1351--1359},
  issn = {1539-2864 0275-004X},
  doi = {10.1097/IAE.0000000000004118},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Visual Acuity/physiology;*Tomography;Optical Coherence/methods;*Retinal Pigment Epithelium/pathology/diagnostic imaging;Macular Degeneration/diagnosis/physiopathology;Photoreceptor Cells;Vertebrate/pathology;Retinal Drusen/diagnosis/diagnostic imaging}
}

@ARTICLE{jebril2024adoc682,
  author = {Jebril, H.~ and Eseng{\"o}n{\"u}l, M.~ and Bogunović, H.~},
  title = {Anomaly Detection in Optical Coherence Tomography Angiography (OCTA) with a Vector-Quantized Variational Auto-Encoder (VQ-VAE).},
  journal = {Bioengineering},
  year = {2024},
  volume = {11},
  number = {7},
  pages = {682},
  issn = {2306-5354},
  doi = {10.3390/bioengineering11070682},
  keywords = {retina;deep learning;OCTA;anomaly detection;epistemic uncertainty;ophthalmology;VQ-VAE}
}

@ARTICLE{riedl2024smcp30,
  author = {Riedl, S.~ and Schmidt-Erfurth, U.~ and Rivail, A.~ and Birner, K.~ and Mai, J.~ and Vogl, W.-D.~ and Wu, Z.~ and Guymer, R.H.~ and Bogunovic, H.~ and Reiter, G.S.~},
  title = {Sequence of Morphological Changes Preceding Atrophy in Intermediate AMD Using Deep Learning.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {8},
  pages = {30},
  issn = {1552-5783 0146-0404},
  doi = {10.1167/iovs.65.8.30},
  keywords = {Female;Humans;Male;Aged;Middle Aged;Aged;80 and over;Follow-Up Studies;Disease Progression;Atrophy;*Deep Learning;*Geographic Atrophy/diagnosis;*Tomography;Optical Coherence/methods;Retinal Drusen/diagnosis;Retinal Pigment Epithelium/pathology/diagnostic imaging}
}

@ARTICLE{mai2024dlpi100466,
  author = {Mai, J.~ and Lachinov, D.~ and Reiter, G.S.~ and Riedl, S.~ and Grechenig, C.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Deep Learning-Based Prediction of Individual Geographic Atrophy Progression from a Single Baseline OCT.},
  journal = {Ophthalmology Science},
  year = {2024},
  volume = {4},
  number = {4},
  pages = {100466},
  doi = {10.1016/j.xops.2024.100466},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85189043309\&doi=10.1016%2fj.xops.2024.100466\&partnerID=40\&md5=9bdb89382ba2b5094fb2de3764fbd1a5}
}

@ARTICLE{mares2024aafm971977,
  author = {Mares, V.~ and Schmidt-Erfurth, U.M.~ and Leingang, O.~ and Fuchs, P.~ and Nehemy, M.B.~ and Bogunovic, H.~ and Barthelmes, D.~ and Reiter, G.S.~},
  title = {Approved AI-Based Fluid Monitoring to Identify Morphological and Functional Treatment Outcomes in Neovascular Age-Related Macular Degeneration in Real-World Routine.},
  journal = {British Journal of Ophthalmology},
  year = {2024},
  volume = {108},
  number = {7},
  pages = {971--977},
  doi = {10.1136/bjo-2022-323014},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85173725696\&doi=10.1136%2fbjo-2022-323014\&partnerID=40\&md5=5abd7631f95a992d9ee2e865438ef4da}
}

@INCOLLECTION{chakravarty2024pamd184198,
  author = {Chakravarty, A.~ and Emre, T.~ and Lachinov, D.~ and Rivail, A.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Predicting Age-Related Macular Degeneration Progression from Retinal Optical Coherence Tomography with Intra-Subject Temporal Consistency.},
  booktitle = {Proceedings of the 7th International Conference on Medical Imaging with Deep Learning, Paris, France, 3-5 July 2024},
  publisher = {JMLR},
  year = {2024},
  editor = {Burgos,N.;Petitjean,C.;Vakalopoulou,M.;Christodoulidis,S.;Coupe,P.;Delingette,H.;Lartizien,C.;Mateus,D.},
  number = {250},
  series = {Proceedings of Machine Learning Research},
  pages = {184--198},
  address = {Cambridge, MA},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85216617327\&partnerID=40\&md5=79052e7a1c0b0a98bd3b4388f2dd11dc}
}

@ARTICLE{riedl2024oapi980,
  author = {Riedl, S.~ and Mai, J.~ and Sch{\"u}rer-Waldheim, S.~ and Faustmann, G.~ and Bogunovic, H.~ and Fritsche, L.~ and Prevost, T.~ and Rueckert, D.~ and Scholl, H.~ and Sivaprasad, S.~ and Lotery, A.~ and Schmidt-Erfurth, U.~},
  title = {OCT-Based Al-Assisted Phenotyping of Intermediate AMD in the Prospective PINNACLE Trial.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 05-09 May 2024},
  pages = {980},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2800240}
}

@ARTICLE{bogunovic2024frlb2386,
  author = {Bogunovic, H.~ and Fazekas, B.~ and Frank, S.~ and Reiter, G.~ and Schmidt-Erfurth, U.~},
  title = {Few-Shot Retinal Layer Boundary Segmentation Adaptation for Regressing Novel Retinal Layers Visible on High Resolution OCT.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {2386},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794199}
}

@ARTICLE{reiter2024rrtt6488,
  author = {Reiter, G.S.~ and Mai, J.~ and McKeown, A.~ and Foos, E.~ and Sadeghipour, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Rate of Response to Treatment in Eyes with Geographic Atrophy Treated with Pegcetacoplan in a Within-Patient Comparison Using Automated AI-Based OCT Biomarker Quantifications in OAKS and DERBY.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {6488},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794736}
}

@ARTICLE{araújo2024rdla2833,
  author = {Araújo, T.~ and Aresta, G.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Robust Deep Learning for Automated AMD Screening and Staging Based on a Retinal Foundation Model.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {2833},
  issn = {0146-0404},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794495}
}

@ARTICLE{aresta2024dles2369,
  author = {Aresta, G.M.~ and Araújo, T.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Deep Learning for Efficient Screening for Retinal Disease from Large OCT Datasets by Knowledge-Based Distillation.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {2369},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794511}
}

@ARTICLE{jeremic2024ssch3891,
  author = {Jeremic, N.~ and Pawloff, M.~ and Lachinov, D.~ and Rokitansky, S.~ and Hasun, M.~ and Weidinger, F.~ and Pollreisz, A.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Severity Stratification of Coronary Heart Disease Using Novel Inner Ellipse Based Foveal Avascular Zone Biomarkers.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {3891},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794008}
}

@ARTICLE{suekei2024eapm450,
  author = {S{\"u}kei, E.~ and Riedl, S.~ and Rumetshofer, E.~ and Schmidinger, N.~ and Mayr, A.~ and Schmidt-Erfurth, U.~ and Klambauer, G.~ and Bogunovic, H.~},
  title = {Enriching AI-Based Predictive Models from Retinal Imaging by Multi-Modal Contrastive Pre-Training.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {450},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2793995}
}

@ARTICLE{taylor2024edfa2266,
  author = {Taylor, T.~ and Kaye, R.A.~ and Mai, J.~ and Fritsche, L.~ and Prevost, T.~ and Rueckert, D.~ and Bogunovic, H.~ and Scholl, H.P.~ and Schmidt-Erfurth, U.~ and Sivaprasad, S.~ and Lotery, A.~},
  title = {Evaluating the Distribution of Fundus Autofluorescence Phenotypes in a Large, European Intermediate AMD Cohort and Describing a Novel Phenotype (A PINNACLE Study Report).},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {2266},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2793902}
}

@ARTICLE{frank2024aitn2114,
  author = {Frank, S.~ and Mares, V.~ and Sacu, S.~ and Fuchs, P.~ and Coulibaly, L.M.~ and Faustmann, G.~ and Gumpinger, M.~ and S{\"u}kei, E.~ and Bogunovic, H.~ and Reiter, G.S.~ and Leingang, O.~ and Vogl, W.-D.~ and Schmidt-Erfurth, U.~},
  title = {Artificial Intelligence-Supported Treatment in Neovascular AMD: Retinal Fluid Correlation with Photoreceptor Condition and Baseline Characteristics.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {2114},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2793904}
}

@ARTICLE{kostolna2024dsps5683,
  author = {Kostolna, K.~ and Reiter, G.S.~ and Coulibaly, L.M.~ and Steiner, I.~ and Mohamed, H.~ and Zhargami, A.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~},
  title = {Deep-Learning Supported Pointwise Structure-Function Correlation from Healthy Eyes to Intermediate and Late Non-Exudative Age-Related Macular Degeneration.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {5683},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794755}
}

@ARTICLE{futterknecht2024pmgf4386,
  author = {Futterknecht, S.~ and Pfau, M.~ and Anders, P.~ and Mai, J.~ and Hall, U.~ and Bogunovic, H.~ and Fritsche, L.~ and Rueckert, D.~ and Schmidt-Erfurth, U.~ and Sivaprasad, S.~ and Lotery, A.~ and Scholl, H.P.~},
  title = {Patient-Tailored Microperimetry Grids for Focal Lesions in Intermediate AMD: A PINNACLE Study Report.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {4386},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794783}
}

@ARTICLE{hinterhuber2024acfr3259,
  author = {Hinterhuber, L.~ and Reiter, G.S.~ and Kostolna, K.~ and Mohamed, H.~ and Coulibaly, L.M.~ and Fuchs, P.~ and Sch{\"u}rer-Waldheim, S.~ and Gumpinger, M.~ and Bogunovic, H.~ and Leingang, O.~ and Schmidt-Erfurth, U.~},
  title = {AI-Based Correlation of Functional Retinal Testing with Retinal Fluid Volumes and Compartments in Neovascular Age-Related Macular Degeneration.},
  journal = {Investigative Ophthalmology \& Visual Science},
  year = {2024},
  volume = {65},
  number = {7: Abstracts Annual Meeting of the Association for Research in Vision and Ophthalmology (ARVO), Seattle, WA, 5-9 May 2024},
  pages = {3259},
  issn = {1552-5783},
  url = {https://iovs.arvojournals.org/article.aspx?articleid=2794809}
}

@ARTICLE{aresta2024dnna7,
  author = {Aresta, G.~ and Araujo, T.~ and Reiter, G.S.~ and Mai, J.~ and Riedl, S.~ and Grechenig, C.~ and Guymer, R.H.~ and Wu, Z.~ and Schmidt-Erfurth, U.~ and Bogunovic, H.~},
  title = {Deep Neural Networks for Automated Outer Plexiform Layer Subsidence Detection on Retinal OCT of Patients with Intermediate AMD.},
  journal = {Translational Vision Science and Technology},
  year = {2024},
  volume = {13},
  number = {6},
  pages = {7},
  doi = {10.1167/tvst.13.6.7},
  url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85196248418\&doi=10.1167%2ftvst.13.6.7\&partnerID=40\&md5=c32cef4d49efd8e76b5acef05514e772}
}

@ARTICLE{holland2024dlco100543,
  author = {Holland, R.~ and Kaye, R.~ and Hagag, A.~ and Leingang, O.~ and Taylor, T.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Scholl, H.~ and Rueckert, D.~ and Lotery, A.~ and Sivaprasad, S.~ and Menten, M.~},
  title = {Deep Learning-Based Clustering of OCT Images for Biomarker Discovery in Age-Related Macular Degeneration (PINNACLE Study Report 4).},
  journal = {Ophthalmology Science},
  year = {2024},
  volume = {4},
  number = {6},
  pages = {100543},
  issn = {2666-9145},
  doi = {10.1016/j.xops.2024.100543}
}

@ARTICLE{prenner2024dprne31567,
  author = {Prenner, V.~ and Schmidt-Erfurth, U.~ and Fuchs, P.~ and Leingang, O.~ and Coulibaly, L.M.~ and Bogunovic, H.~ and Barthelmes, D.~ and Reiter, G.S.~},
  title = {Dynamics and Patterns of Recurrence in Neovascular AMD during Real-World Management Using Automated Fluid Monitoring.},
  journal = {Heliyon},
  year = {2024},
  volume = {10},
  number = {10},
  pages = {e31567},
  issn = {2405-8440},
  doi = {10.1016/j.heliyon.2024.e31567}
}

@ARTICLE{mares2024asoc31,
  author = {Mares, V.~ and Nehemy, M.B.~ and Bogunovic, H.~ and Frank, S.~ and Reiter, G.S.~ and Schmidt-Erfurth, U.~},
  title = {AI-Based Support for Optical Coherence Tomography in Age-Related Macular Degeneration.},
  journal = {International Journal of Retina and Vitreous},
  year = {2024},
  volume = {10},
  pages = {31},
  issn = {2056-9920},
  doi = {10.1186/s40942-024-00549-1},
  keywords = {Optical coherence tomography;Deep learning;Age-related macular degeneration;Drusen;Artificial intelligence;Geographic atrophy;Anti-VEGF;Choroidal neovascularization}
}

@ARTICLE{hollaus2024aecp863870,
  author = {Hollaus, M.~ and Georgopoulos, M.~ and Iby, J.~ and Brugger, J.~ and Leingang, O.~ and Bogunovic, H.~ and Schmidt-Erfurth, U.~ and Sacu, S.~},
  title = {Analysing Early Changes of Photoreceptor Layer Thickness Following Surgery in Eyes with Epiretinal Membranes.},
  journal = {Eye},
  year = {2024},
  volume = {38},
  number = {5},
  pages = {863--870},
  issn = {1476-5454 0950-222X},
  doi = {10.1038/s41433-023-02793-5}
}

@ARTICLE{aresta2024idlr4700947023,
  author = {Aresta, G.~ and Araújo, T.~ and Fazekas, B.~ and Mai, J.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Interactive Deep Learning-Based Retinal OCT Layer Segmentation Refinement by Regressing Translation Maps.},
  journal = {IEEE Access},
  year = {2024},
  volume = {12},
  pages = {47009--47023},
  issn = {2169-3536},
  doi = {10.1109/ACCESS.2024.3379015}
}

@ARTICLE{lachinov2024lsmd11651179,
  author = {Lachinov, D.~ and Chakravarty, A.~ and Grechenig, C.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~ and {for the Alzheimer’s Disease Neuroimaging Initiative (ADNI)}},
  title = {Learning Spatio-Temporal Model of Disease Progression with NeuralODEs from Longitudinal Volumetric Data.},
  journal = {IEEE Transactions on Medical Imaging},
  year = {2024},
  volume = {43},
  number = {3},
  pages = {1165--1179},
  issn = {1558-254X},
  doi = {10.1109/TMI.2023.3330576}
}

@ARTICLE{fang2024ofpd99,
  author = {Fang, H.~ and Li, F.~ and Wu, J.~ and Fu, H.~ and Sun, X.~ and Orlando, J.I.~ and Bogunović, H.~ and Zhang, X.~ and Xu, Y.~},
  title = {Open Fundus Photograph Dataset with Pathologic Myopia Recognition and Anatomical Structure Annotation.},
  journal = {Scientific Data},
  year = {2024},
  volume = {11},
  pages = {99},
  issn = {2052-4463},
  doi = {10.1038/s41597-024-02911-2},
  url = {https://doi.org/10.1038/s41597-024-02911-2}
}

@INCOLLECTION{emre2023pd2m132141,
  author = {Emre, T.~ and Oghbaie, M.~ and Chakravarty, A.~ and Rivail, A.~ and Riedl, S.~ and Mai, J.~ and P.N. Scholl, H.~ and Sivaprasad, S.~ and Rueckert, D.~ and Lotery, A.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Pretrained Deep 2.5D Models for Efficient Predictive Modeling from Retinal OCT: A PINNACLE Study Report.},
  booktitle = {Ophthalmic Medical Image Analysis: 10th International Workshop, OMIA 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, 12 October 2023, Proceedings},
  publisher = {Springer},
  year = {2023},
  editor = {Antony,B.;Chen,H.;Fang,H.;Fu,H.;Li,C.S.;Zheng,Y.},
  number = {14096},
  series = {Lecture Notes in Computer Science},
  pages = {132--141},
  address = {Cham},
  url = {https://www.doi.org/10.1007/978-3-031-44013-7_14}
}

@INCOLLECTION{oghbaie2023teco358367,
  author = {Oghbaie, M.~ and Araújo, T.~ and Emre, T.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {Transformer-Based End-to-End Classification of Variable-Length Volumetric Data.},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention – MICCAI 2023, 26th International Conference, Vancouver, BC, Canada, October 8–12, 2023, Proceedings, Part VI},
  publisher = {Springer},
  year = {2023},
  editor = {Greenspan,H.;Madabhushi,A.;Mousavi,P.;Salcudean,S.;Duncan,J.;Syeda-Mahmood,T.;Taylor,R.},
  number = {14225},
  series = {Lecture Notes in Computer Science},
  pages = {358--367},
  address = {Cham},
  url = {https://doi.org/10.1007/978-3-031-43987-2_35}
}

@ARTICLE{motschi2023chfl27092725,
  author = {Motschi, A.R.~ and Schwarzhans, F.~ and Desissaire, S.~ and Steiner, S.~ and Bogunović, H.~ and Roberts, P.K.~ and Vass, C.~ and Hitzenberger, C.K.~ and Pircher, M.~},
  title = {Characteristics of Henle’s Fiber Layer in Healthy and Glaucoma Eyes Assessed by Polarization-Sensitive Optical Coherence Tomography.},
  journal = {Biomedical Optics Express},
  year = {2023},
  volume = {14},
  number = {6},
  pages = {2709--2725},
  issn = {2156-7085},
  doi = {10.1364/BOE.485327}
}

@ARTICLE{motschi2022qadbe0278679,
  author = {Motschi, A.R.~ and Schwarzhans, F.~ and Desissaire, S.~ and Steiner, S.~ and Bogunović, H.~ and Roberts, P.K.~ and Vass, C.~ and Hitzenberger, C.K.~ and Pircher, M.~},
  title = {Quantitative Assessment of Depolarization by the Retinal Pigment Epithelium in Healthy and Glaucoma Subjects Measured over a Large Field of View.},
  journal = {PLoS One},
  year = {2022},
  volume = {17},
  number = {12},
  pages = {e0278679},
  issn = {1932-6203},
  doi = {10.1371/journal.pone.0278679},
  keywords = {Humans;Health Status;Refraction;Ocular;Fluorescein Angiography/methods;Tomography;Optical Coherence/methods;*Glaucoma;*Retinal Pigment Epithelium/diagnostic imaging}
}

@INCOLLECTION{emre2022ttin625634,
  author = {Emre, T.~ and Chakravarty, A.~ and Rivail, A.~ and Riedl, S.~ and Schmidt-Erfurth, U.~ and Bogunović, H.~},
  title = {TINC: Temporally Informed Non-Contrastive Learning for Disease Progression Modeling in Retinal OCT Volumes.},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2022, 25th International Conference, Singapore, 18–22 September 2022, Proceedings, Part II},
  publisher = {Springer},
  year = {2022},
  editor = {Wang,L.;Dou,Q.;Fletcher,P.T.;Speidel,S.;Li,S.},
  number = {13432},
  series = {Lecture Notes in Computer Science},
  pages = {625--634},
  address = {Cham},
  month = {sep},
  url = {https://www.doi.org/10.1007/978-3-031-16434-7_60}
}

@ARTICLE{motschi2021iqfa43804400,
  author = {Motschi, A.R.~ and Roberts, P.K.~ and Desissaire, S.~ and Schranz, M.~ and Schwarzhans, F.~ and Bogunović, H.~ and Pircher, M.~ and Hitzenberger, C.K.~},
  title = {Identification and Quantification of Fibrotic Areas in the Human Retina Using Polarization-Sensitive OCT.},
  journal = {Biomedical Optics Express},
  year = {2021},
  volume = {12},
  number = {7},
  pages = {4380--4400},
  issn = {2156-7085},
  doi = {10.1364/BOE.426650}
}