Publications by Moritz Schäfer
2024
- Schaefer M., Peneder P., Malzl D., Peycheva M., Burton J., Hakobyan A., Sharma V., Krausgruber T., Menche J., Tomazou E.M., Bock C.
Multimodal Learning of Transcriptomes and Text Enables Interactive Single-Cell RNA-Seq Data Exploration with Natural-Language Chats.
bioRxiv 2024.10.15.618501, (2024) [bib]
@ARTICLE{schaefer2024mltt20241015618501, author = {Schaefer, M.~ and Peneder, P.~ and Malzl, D.~ and Peycheva, M.~ and Burton, J.~ and Hakobyan, A.~ and Sharma, V.~ and Krausgruber, T.~ and Menche, J.~ and Tomazou, E.M.~ and Bock, C.~}, title = {Multimodal Learning of Transcriptomes and Text Enables Interactive Single-Cell RNA-Seq Data Exploration with Natural-Language Chats.}, journal = {bioRxiv}, year = {2024}, pages = {2024.10.15.618501}, doi = {10.1101/2024.10.15.618501}, url = {http://biorxiv.org/content/early/2024/10/18/2024.10.15.618501.abstract} } - Schaefer M., Reichl S., Ter Horst R., Nicolas A.M., Krausgruber T., Piras F., Stepper P., Bock C., Samwald M.
GPT-4 as a Biomedical Simulator.
Computers in Biology and Medicine 178:108796, (2024) [bib]
@ARTICLE{schaefer2024gaab108796, author = {Schaefer, M.~ and Reichl, S.~ and Ter Horst, R.~ and Nicolas, A.M.~ and Krausgruber, T.~ and Piras, F.~ and Stepper, P.~ and Bock, C.~ and Samwald, M.~}, title = {GPT-4 as a Biomedical Simulator.}, journal = {Computers in Biology and Medicine}, year = {2024}, volume = {178}, pages = {108796}, issn = {1879-0534 0010-4825}, doi = {10.1016/j.compbiomed.2024.108796}, keywords = {Artificial intelligence;Computational biology;Large language models;Biomedical simulation;GPT-4} }
2022
- Simmler P., Cortijo C., Koch L.M., Galliker P., Angori S., Bolck H.A., Mueller C., Vukolic A., Mirtschink P., Christinat Y., Davidson N.R., Lehmann K.-V., Pellegrini G., Pauli C., Lenggenhager D., Guccini I., Ringel T., Hirt C., Marquart K.F., Schaefer M., Rätsch G., Peter M., Moch H., Stoffel M., Schwank G.
SF3B1 Facilitates HIF1-Signaling and Promotes Malignancy in Pancreatic Cancer.
Cell Reports 40(8):111266, (2022) [bib]
@ARTICLE{simmler2022sfhp111266, author = {Simmler, P.~ and Cortijo, C.~ and Koch, L.M.~ and Galliker, P.~ and Angori, S.~ and Bolck, H.A.~ and Mueller, C.~ and Vukolic, A.~ and Mirtschink, P.~ and Christinat, Y.~ and Davidson, N.R.~ and Lehmann, K.-V.~ and Pellegrini, G.~ and Pauli, C.~ and Lenggenhager, D.~ and Guccini, I.~ and Ringel, T.~ and Hirt, C.~ and Marquart, K.F.~ and Schaefer, M.~ and R{\"a}tsch, G.~ and Peter, M.~ and Moch, H.~ and Stoffel, M.~ and Schwank, G.~}, title = {SF3B1 Facilitates HIF1-Signaling and Promotes Malignancy in Pancreatic Cancer.}, journal = {Cell Reports}, year = {2022}, volume = {40}, number = {8}, pages = {111266}, issn = {2211-1247}, doi = {10.1016/j.celrep.2022.111266}, keywords = {hypoxia;chromophobe renal cell carcinoma;CP: Cancer;glycolysis;HIF1 transcription;pancreatic cancer;SF3B1;splicing} }