Publications by Moritz Madern
2024
- Madern M., Reiter W., Stanek F., Hartl N., Mechtler K., Hartl M.
A Causal Model of Ion Interference Enables Assessment and Correction of Ratio Compression in Multiplex Proteomics.
Molecular & Cellular Proteomics 23(1):100694, (2024) [bib]
@ARTICLE{madern2024acmi100694, author = {Madern, M.~ and Reiter, W.~ and Stanek, F.~ and Hartl, N.~ and Mechtler, K.~ and Hartl, M.~}, title = {A Causal Model of Ion Interference Enables Assessment and Correction of Ratio Compression in Multiplex Proteomics.}, journal = {Molecular \& Cellular Proteomics}, year = {2024}, volume = {23}, number = {1}, pages = {100694}, issn = {1535-9484}, doi = {10.1016/j.mcpro.2023.100694} }
2023
- Sandner L., Alteneder M., Rica R., Woller B., Sala E., Frey T., Tosevska A., Zhu C., Madern M., Khan M., Hoffmann P., Schebesta A., Taniuchi I., Bonelli M., Schmetterer K., Iannacone M., Kuka M., Ellmeier W., Sakaguchi S., Herbst R., Boucheron N.
The Guanine Nucleotide Exchange Factor Rin-Like Controls Tfh Cell Differentiation via CD28 Signaling.
Journal of Experimental Medicine 220(11):e20221466, (2023) [bib]
@ARTICLE{sandner2023gnefe20221466, author = {Sandner, L.~ and Alteneder, M.~ and Rica, R.~ and Woller, B.~ and Sala, E.~ and Frey, T.~ and Tosevska, A.~ and Zhu, C.~ and Madern, M.~ and Khan, M.~ and Hoffmann, P.~ and Schebesta, A.~ and Taniuchi, I.~ and Bonelli, M.~ and Schmetterer, K.~ and Iannacone, M.~ and Kuka, M.~ and Ellmeier, W.~ and Sakaguchi, S.~ and Herbst, R.~ and Boucheron, N.~}, title = {The Guanine Nucleotide Exchange Factor Rin-Like Controls Tfh Cell Differentiation via CD28 Signaling.}, journal = {Journal of Experimental Medicine}, year = {2023}, volume = {220}, number = {11}, pages = {e20221466}, issn = {1540-9538 0022-1007}, doi = {10.1084/jem.20221466}, keywords = {Animals;Humans;Mice;Signal Transduction;*CD28 Antigens;*Guanine Nucleotide Exchange Factors;Adoptive Transfer;Cell Differentiation} } - Khan M., Alteneder M., Reiter W., Krausgruber T., Dobnikar L., Madern M., Waldherr M., Bock C., Hartl M., Ellmeier W., Henriksson J., Boucheron N.
Single-Cell Profiling Uncovers Regulatory Programs of Pathogenic Th2 Cells in Allergic Asthma.
bioRxiv 2023.08.10.552772, (2023) [bib]
@ARTICLE{khan2023spur20230810552772, author = {Khan, M.~ and Alteneder, M.~ and Reiter, W.~ and Krausgruber, T.~ and Dobnikar, L.~ and Madern, M.~ and Waldherr, M.~ and Bock, C.~ and Hartl, M.~ and Ellmeier, W.~ and Henriksson, J.~ and Boucheron, N.~}, title = {Single-Cell Profiling Uncovers Regulatory Programs of Pathogenic Th2 Cells in Allergic Asthma.}, journal = {bioRxiv}, year = {2023}, pages = {2023.08.10.552772}, doi = {10.1101/2023.08.10.552772} } - Zhu C., Stolz V., Simonovic N., Al-Rubaye O., Vcelkova T., Moos V., Hess L., Hagelkrueys A., Madern M., Reiter W., Meixner A., Bock C., Hartl M., Ellmeier W., Seiser C.
Targeting the Catalytic Activity of HDAC1 in T Cells Protects against Experimental Autoimmune Encephalomyelitis.
bioRxiv 2023.04.14.536700, (2023) [bib]
@ARTICLE{zhu2023tcah20230414536700, author = {Zhu, C.~ and Stolz, V.~ and Simonovic, N.~ and Al-Rubaye, O.~ and Vcelkova, T.~ and Moos, V.~ and Hess, L.~ and Hagelkrueys, A.~ and Madern, M.~ and Reiter, W.~ and Meixner, A.~ and Bock, C.~ and Hartl, M.~ and Ellmeier, W.~ and Seiser, C.~}, title = {Targeting the Catalytic Activity of HDAC1 in T Cells Protects against Experimental Autoimmune Encephalomyelitis.}, journal = {bioRxiv}, year = {2023}, pages = {2023.04.14.536700}, doi = {10.1101/2023.04.14.536700} }
2022
- Didusch S., Madern M., Hartl M., Baccarini M.
amica: An Interactive and User-Friendly Web-Platform for the Analysis of Proteomics Data.
BMC Genomics 23:817, (2022) [bib]
@ARTICLE{didusch2022aiuw817, author = {Didusch, S.~ and Madern, M.~ and Hartl, M.~ and Baccarini, M.~}, title = {amica: An Interactive and User-Friendly Web-Platform for the Analysis of Proteomics Data.}, journal = {BMC Genomics}, year = {2022}, volume = {23}, pages = {817}, issn = {1471-2164}, doi = {10.1186/s12864-022-09058-7}, keywords = {Databases;Factual;*Software;Internet;Proteins/metabolism;Proteomics;*Proteomics/methods;Data analysis;Data visualization;LC-MS/MS;Web application} } - Varnavides G., Madern M., Anrather D., Hartl N., Reiter W., Hartl M.
In Search of a Universal Method: A Comparative Survey of Bottom-Up Proteomics Sample Preparation Methods.
Journal of Proteome Research 21(10), 2397–2411, (2022) [bib]